Literature DB >> 15600890

Extracting DNA twist rigidity from experimental supercoiling data.

Sébastien Neukirch1.   

Abstract

We use an elastic rod model with contact to study the extension versus rotation diagrams of single supercoiled DNA molecules. We reproduce quantitatively the supercoiling response of overtwisted DNA and, using experimental data, we obtain an estimate of the effective supercoiling radius and of the twist rigidity of B-DNA. We find that the twist rigidity of DNA seems to vary widely with the nature and concentration of the salt buffer in which it is immersed.

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Year:  2004        PMID: 15600890     DOI: 10.1103/PhysRevLett.93.198107

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  23 in total

1.  Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.

Authors:  John F Marko; Sébastien Neukirch
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-11

2.  Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling.

Authors:  Andrey G Cherstvy
Journal:  J Biol Phys       Date:  2011-01-18       Impact factor: 1.365

3.  Energetics at the DNA supercoiling transition.

Authors:  Hergen Brutzer; Nicholas Luzzietti; Daniel Klaue; Ralf Seidel
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

4.  Braiding DNA: experiments, simulations, and models.

Authors:  G Charvin; A Vologodskii; D Bensimon; V Croquette
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

5.  Compressing a rigid filament: buckling and cyclization.

Authors:  N-K Lee; A Johner; S-C Hong
Journal:  Eur Phys J E Soft Matter       Date:  2007-11-09       Impact factor: 1.890

6.  Elasticity and electrostatics of plectonemic DNA.

Authors:  N Clauvelin; B Audoly; S Neukirch
Journal:  Biophys J       Date:  2009-05-06       Impact factor: 4.033

7.  How topological constraints facilitate growth and stability of bubbles in DNA.

Authors:  Jae-Hyung Jeon; Wokyung Sung
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

8.  On the topology of chromatin fibres.

Authors:  Maria Barbi; Julien Mozziconacci; Jean-Marc Victor; Hua Wong; Christophe Lavelle
Journal:  Interface Focus       Date:  2012-02-01       Impact factor: 3.906

9.  Linker histones incorporation maintains chromatin fiber plasticity.

Authors:  Pierre Recouvreux; Christophe Lavelle; Maria Barbi; Natalia Conde E Silva; Eric Le Cam; Jean-Marc Victor; Jean-Louis Viovy
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

Review 10.  Chromatin fiber dynamics under tension and torsion.

Authors:  Christophe Lavelle; Jean-Marc Victor; Jordanka Zlatanova
Journal:  Int J Mol Sci       Date:  2010-04-12       Impact factor: 5.923

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