Literature DB >> 17990257

Applications of terahertz spectroscopy in biosystems.

David F Plusquellic1, Karen Siegrist, Edwin J Heilweil, Okan Esenturk.   

Abstract

Terahertz (THz) spectroscopic investigations of condensed-phase biological samples are reviewed ranging from the simple crystalline forms of amino acids, carbohydrates and polypeptides to the more complex aqueous forms of small proteins, DNA and RNA. Vibrationally resolved studies of crystalline samples have revealed the exquisite sensitivity of THz modes to crystalline order, temperature, conformational form, peptide sequence and local solvate environment and have given unprecedented measures of the binding force constants and anharmonic character of the force fields, properties necessary to improve predictability but not readily obtainable using any other method. These studies have provided benchmark vibrational data on extended periodic structures for direct comparisons with classical (CHARMm) and quantum chemical (density functional theory) theories. For the larger amorphous and/or aqueous phase samples, the THz modes form a continuum-like absorption that arises because of the full accessibility to conformational space and/or the rapid time scale for inter-conversion in these environments. Despite severe absorption by liquid water, detailed investigations have uncovered the photo- and hydration-induced conformational flexibility of proteins, the solvent shell depth of the water/biomolecule boundary layers and the solvent reorientation dynamics occurring in these interfacial layers that occur on sub-picosecond time scales. As such, THz spectroscopy has enhanced and extended the accessibility to intermolecular forces, length- and timescales important in biological structure and activity.

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Year:  2007        PMID: 17990257     DOI: 10.1002/cphc.200700332

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  32 in total

1.  Molecular dynamics modeling of the sub-THz vibrational absorption of thioredoxin from E. coli.

Authors:  Naser Alijabbari; Yikan Chen; Igor Sizov; Tatiana Globus; Boris Gelmont
Journal:  J Mol Model       Date:  2011-09-27       Impact factor: 1.810

2.  Dissecting the THz spectrum of liquid water from first principles via correlations in time and space.

Authors:  Matthias Heyden; Jian Sun; Stefan Funkner; Gerald Mathias; Harald Forbert; Martina Havenith; Dominik Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

3.  Calculation of the infrared spectra of proteins.

Authors:  Adam J Mott; Peter Rez
Journal:  Eur Biophys J       Date:  2014-12-24       Impact factor: 1.733

4.  Optimizing a coarse-grained space for approximate normal-mode vibrations of molecular heterodimers.

Authors:  Makoto Isogai; Masataka Seshimo; Hirohiko Houjou
Journal:  J Mol Model       Date:  2021-04-27       Impact factor: 1.810

5.  Indices to evaluate the reliability of coarse-grained representations of mixed inter/intramolecular vibrations.

Authors:  Makoto Isogai; Hirohiko Houjou
Journal:  J Mol Model       Date:  2018-08-02       Impact factor: 1.810

6.  Label-free protein detection using terahertz time-domain spectroscopy.

Authors:  Xiaohui Han; Shihan Yan; Ziyi Zang; Dongshan Wei; Hong-Liang Cui; Chunlei Du
Journal:  Biomed Opt Express       Date:  2018-02-06       Impact factor: 3.732

7.  Characterization of volatile organic compounds (VOCs) in their liquid-phase by terahertz time-domain spectroscopy.

Authors:  Annalisa D'Arco; Marta Di Fabrizio; Valerio Dolci; Augusto Marcelli; Massimo Petrarca; Giancarlo Della Ventura; Stefano Lupi
Journal:  Biomed Opt Express       Date:  2019-12-02       Impact factor: 3.732

8.  Solvation dynamics of biomolecules: modeling and terahertz experiments.

Authors:  David M Leitner; Martin Gruebele; Martina Havenith
Journal:  HFSP J       Date:  2008-09-15

9.  Nanoscale Terahertz Monitoring on Multiphase Dynamic Assembly of Nanoparticles under Aqueous Environment.

Authors:  Eui-Sang Yu; Sang-Hun Lee; Geon Lee; Q-Han Park; Aram J Chung; Minah Seo; Yong-Sang Ryu
Journal:  Adv Sci (Weinh)       Date:  2021-03-24       Impact factor: 16.806

10.  Ultrafast laser-based spectroscopy and sensing: applications in LIBS, CARS, and THz spectroscopy.

Authors:  Megan R Leahy-Hoppa; Joseph Miragliotta; Robert Osiander; Jennifer Burnett; Yamac Dikmelik; Caroline McEnnis; James B Spicer
Journal:  Sensors (Basel)       Date:  2010-04-29       Impact factor: 3.847

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