Literature DB >> 17989245

A second-generation combined linkage physical map of the human genome.

Tara C Matise1, Fang Chen, Wenwei Chen, Francisco M De La Vega, Mark Hansen, Chunsheng He, Fiona C L Hyland, Giulia C Kennedy, Xiangyang Kong, Sarah S Murray, Janet S Ziegle, William C L Stewart, Steven Buyske.   

Abstract

We have completed a second-generation linkage map that incorporates sequence-based positional information. This new map, the Rutgers Map v.2, includes 28,121 polymorphic markers with physical positions corroborated by recombination-based data. Sex-averaged and sex-specific linkage map distances, along with confidence intervals, have been estimated for all map intervals. In addition, a regression-based smoothed map is provided that facilitates interpolation of positions of unmapped markers on this map. With nearly twice as many markers as our first-generation map, the Rutgers Map continues to be a unique and comprehensive resource for obtaining genetic map information for large sets of polymorphic markers.

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Year:  2007        PMID: 17989245      PMCID: PMC2099587          DOI: 10.1101/gr.7156307

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  17 in total

1.  Multipoint linkage analysis. A cautionary note.

Authors:  J Halpern; A S Whittemore
Journal:  Hum Hered       Date:  1999-07       Impact factor: 0.444

2.  Bias in multipoint linkage analysis arising from map misspecification.

Authors:  E W Daw; E A Thompson; E M Wijsman
Journal:  Genet Epidemiol       Date:  2000-12       Impact factor: 2.135

3.  The first linkage disequilibrium (LD) maps: delineation of hot and cold blocks by diplotype analysis.

Authors:  N Maniatis; A Collins; C F Xu; L C McCarthy; D R Hewett; W Tapper; S Ennis; X Ke; N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

4.  A high-resolution recombination map of the human genome.

Authors:  Augustine Kong; Daniel F Gudbjartsson; Jesus Sainz; Gudrun M Jonsdottir; Sigurjon A Gudjonsson; Bjorgvin Richardsson; Sigrun Sigurdardottir; John Barnard; Bjorn Hallbeck; Gisli Masson; Adam Shlien; Stefan T Palsson; Michael L Frigge; Thorgeir E Thorgeirsson; Jeffrey R Gulcher; Kari Stefansson
Journal:  Nat Genet       Date:  2002-06-10       Impact factor: 38.330

5.  Large-scale genotyping of complex DNA.

Authors:  Giulia C Kennedy; Hajime Matsuzaki; Shoulian Dong; Wei-min Liu; Jing Huang; Guoying Liu; Xing Su; Manqiu Cao; Wenwei Chen; Jane Zhang; Weiwei Liu; Geoffrey Yang; Xiaojun Di; Thomas Ryder; Zhijun He; Urvashi Surti; Michael S Phillips; Michael T Boyce-Jacino; Stephen P A Fodor; Keith W Jones
Journal:  Nat Biotechnol       Date:  2003-09-07       Impact factor: 54.908

6.  A combined linkage-physical map of the human genome.

Authors:  X Kong; K Murphy; T Raj; C He; P S White; T C Matise
Journal:  Am J Hum Genet       Date:  2004-10-14       Impact factor: 11.025

7.  Improving estimates of genetic maps: a meta-analysis-based approach.

Authors:  William C L Stewart
Journal:  Genet Epidemiol       Date:  2007-07       Impact factor: 2.135

8.  PedCheck: a program for identification of genotype incompatibilities in linkage analysis.

Authors:  J R O'Connell; D E Weeks
Journal:  Am J Hum Genet       Date:  1998-07       Impact factor: 11.025

9.  Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping of the human genome.

Authors:  J Dausset; H Cann; D Cohen; M Lathrop; J M Lalouel; R White
Journal:  Genomics       Date:  1990-03       Impact factor: 5.736

10.  Construction of multilocus genetic linkage maps in humans.

Authors:  E S Lander; P Green
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

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  171 in total

1.  Enhancing radiation hybrid mapping through whole genome amplification.

Authors:  Genesio M Karere; Leslie A Lyons; Lutz Froenicke
Journal:  Hereditas       Date:  2010-04       Impact factor: 3.271

2.  Linkage and association of successful aging to the 6q25 region in large Amish kindreds.

Authors:  Digna R Velez Edwards; John R Gilbert; James E Hicks; Jamie L Myers; Lan Jiang; Anna C Cummings; Shengru Guo; Paul J Gallins; Ioanna Konidari; Laura Caywood; Lori Reinhart-Mercer; Denise Fuzzell; Claire Knebusch; Renee Laux; Charles E Jackson; Margaret A Pericak-Vance; Jonathan L Haines; William K Scott
Journal:  Age (Dordr)       Date:  2012-07-07

3.  Eyes wide open: the (mis)use of combined power of discrimination for X-linked short tandem repeats.

Authors:  Enrique Medina-Acosta; Filipe Brum Machado
Journal:  Mol Biol Rep       Date:  2010-11-26       Impact factor: 2.316

4.  Inference of unexpected genetic relatedness among individuals in HapMap Phase III.

Authors:  Trevor J Pemberton; Chaolong Wang; Jun Z Li; Noah A Rosenberg
Journal:  Am J Hum Genet       Date:  2010-10-08       Impact factor: 11.025

5.  Genome-wide linkage analyses of non-Hispanic white families identify novel loci for familial late-onset Alzheimer's disease.

Authors:  Brian W Kunkle; James Jaworski; Sandra Barral; Badri Vardarajan; Gary W Beecham; Eden R Martin; Laura S Cantwell; Amanda Partch; Thomas D Bird; Wendy H Raskind; Anita L DeStefano; Regina M Carney; Michael Cuccaro; Jeffrey M Vance; Lindsay A Farrer; Alison M Goate; Tatiana Foroud; Richard P Mayeux; Gerard D Schellenberg; Jonathan L Haines; Margaret A Pericak-Vance
Journal:  Alzheimers Dement       Date:  2015-09-11       Impact factor: 21.566

6.  PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Authors:  Alejandro Q Nato; Nicola H Chapman; Harkirat K Sohi; Hiep D Nguyen; Zoran Brkanac; Ellen M Wijsman
Journal:  Bioinformatics       Date:  2015-07-30       Impact factor: 6.937

7.  DFNB89, a novel autosomal recessive nonsyndromic hearing impairment locus on chromosome 16q21-q23.2.

Authors:  Sulman Basit; Kwanghyuk Lee; Rabia Habib; Leon Chen; Regie Lyn P Santos-Cortez; Zahid Azeem; Paula Andrade; Muhammad Ansar; Wasim Ahmad; Suzanne M Leal
Journal:  Hum Genet       Date:  2010-12-22       Impact factor: 4.132

8.  Genome scan for cognitive trait loci of dyslexia: Rapid naming and rapid switching of letters, numbers, and colors.

Authors:  Kevin B Rubenstein; Wendy H Raskind; Virginia W Berninger; Mark M Matsushita; Ellen M Wijsman
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2014-05-08       Impact factor: 3.568

9.  Linkage analysis of Tourette syndrome in a large Utah pedigree.

Authors:  Stacey Knight; Hilary Coon; Michael Johnson; Mark F Leppert; Nicola J Camp; William M McMahon
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2010-03-05       Impact factor: 3.568

10.  Mapping of a novel autosomal recessive hypotrichosis locus on chromosome 10q11.23–22.3.

Authors:  Gul Naz; Ghazanfar Ali; Syed Kamran-ul-Hassan Naqvi; Zahid Azeem; Wasim Ahmad
Journal:  Hum Genet       Date:  2010-04       Impact factor: 4.132

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