Literature DB >> 15486828

A combined linkage-physical map of the human genome.

X Kong1, K Murphy, T Raj, C He, P S White, T C Matise.   

Abstract

We have constructed de novo a high-resolution genetic map that includes the largest set, to our knowledge, of polymorphic markers (N=14,759) for which genotype data are publicly available; that combines genotype data from both the Centre d'Etude du Polymorphisme Humain (CEPH) and deCODE pedigrees; that incorporates single-nucleotide polymorphisms; and that also incorporates sequence-based positional information. The position of all markers on our map is corroborated by both genomic sequence and recombination-based data. This specific combination of features maximizes marker inclusion, coverage, and resolution, making this map uniquely suitable as a comprehensive resource for determining genetic map information (order and distances) for any large set of polymorphic markers.

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Year:  2004        PMID： 15486828      PMCID： PMC1182151          DOI： 10.1086/426405

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


  15 in total

1.  A high-resolution recombination map of the human genome.

Authors:  Augustine Kong; Daniel F Gudbjartsson; Jesus Sainz; Gudrun M Jonsdottir; Sigurjon A Gudjonsson; Bjorgvin Richardsson; Sigrun Sigurdardottir; John Barnard; Bjorn Hallbeck; Gisli Masson; Adam Shlien; Stefan T Palsson; Michael L Frigge; Thorgeir E Thorgeirsson; Jeffrey R Gulcher; Kari Stefansson
Journal:  Nat Genet       Date:  2002-06-10       Impact factor: 38.330

2.  A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set.

Authors:  Tara C Matise; Ravi Sachidanandam; Andrew G Clark; Leonid Kruglyak; Ellen Wijsman; Jerzy Kakol; Steven Buyske; Buena Chui; Patrick Cohen; Claudia de Toma; Margaret Ehm; Stephen Glanowski; Chunsheng He; Jeremy Heil; Kyriacos Markianos; Ivy McMullen; Margaret A Pericak-Vance; Arkadiy Silbergleit; Lincoln Stein; Michael Wagner; Alexander F Wilson; Jeffrey D Winick; Emily S Winn-Deen; Carl T Yamashiro; Howard M Cann; Eric Lai; Arthur L Holden
Journal:  Am J Hum Genet       Date:  2003-07-03       Impact factor: 11.025

3.  Large-scale genotyping of complex DNA.

Authors:  Giulia C Kennedy; Hajime Matsuzaki; Shoulian Dong; Wei-min Liu; Jing Huang; Guoying Liu; Xing Su; Manqiu Cao; Wenwei Chen; Jane Zhang; Weiwei Liu; Geoffrey Yang; Xiaojun Di; Thomas Ryder; Zhijun He; Urvashi Surti; Michael S Phillips; Michael T Boyce-Jacino; Stephen P A Fodor; Keith W Jones
Journal:  Nat Biotechnol       Date:  2003-09-07       Impact factor: 54.908

4.  me-PCR: a refined ultrafast algorithm for identifying sequence-defined genomic elements.

Authors:  Kevin Murphy; Towfique Raj; R Scott Winters; Peter S White
Journal:  Bioinformatics       Date:  2004-01-22       Impact factor: 6.937

5.  A highly informative SNP linkage panel for human genetic studies.

Authors:  Sarah Shaw Murray; Arnold Oliphant; Richard Shen; Celeste McBride; Rhoberta J Steeke; Stuart G Shannon; Todd Rubano; Bahram G Kermani; Jian-Bing Fan; Mark S Chee; Mark S T Hansen
Journal:  Nat Methods       Date:  2004-10-21       Impact factor: 28.547

6.  Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping of the human genome.

Authors:  J Dausset; H Cann; D Cohen; M Lathrop; J M Lalouel; R White
Journal:  Genomics       Date:  1990-03       Impact factor: 5.736

7.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

8.  The fine-scale structure of recombination rate variation in the human genome.

Authors:  Gilean A T McVean; Simon R Myers; Sarah Hunt; Panos Deloukas; David R Bentley; Peter Donnelly
Journal:  Science       Date:  2004-04-23       Impact factor: 47.728

9.  Construction of multilocus genetic linkage maps in humans.

Authors:  E S Lander; P Green
Journal:  Proc Natl Acad Sci U S A       Date:  1987-04       Impact factor: 11.205

10.  Large-scale integration of human genetic and physical maps.

Authors:  Caroline M Nievergelt; Douglas W Smith; J Bradley Kohlenberg; Nicholas J Schork
Journal:  Genome Res       Date:  2004-05-12       Impact factor: 9.043
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  115 in total

1.  Genome-scan for IQ discrepancy in autism: evidence for loci on chromosomes 10 and 16.

Authors:  Nicola H Chapman; Annette Estes; Jeff Munson; Raphael Bernier; Sara J Webb; Joseph H Rothstein; Nancy J Minshew; Geraldine Dawson; Gerard D Schellenberg; Ellen M Wijsman
Journal:  Hum Genet       Date:  2010-10-21       Impact factor: 4.132

2.  SimPed: a simulation program to generate haplotype and genotype data for pedigree structures.

Authors:  Suzanne M Leal; Kai Yan; Bertram Müller-Myhsok
Journal:  Hum Hered       Date:  2005-10-13       Impact factor: 0.444

3.  Combined analysis from eleven linkage studies of bipolar disorder provides strong evidence of susceptibility loci on chromosomes 6q and 8q.

Authors:  Matthew B McQueen; B Devlin; Stephen V Faraone; Vishwajit L Nimgaonkar; Pamela Sklar; Jordan W Smoller; Rami Abou Jamra; Margot Albus; Silviu-Alin Bacanu; Miron Baron; Thomas B Barrett; Wade Berrettini; Deborah Blacker; William Byerley; Sven Cichon; Willam Coryell; Nick Craddock; Mark J Daly; J Raymond Depaulo; Howard J Edenberg; Tatiana Foroud; Michael Gill; T Conrad Gilliam; Marian Hamshere; Ian Jones; Lisa Jones; Suh-Hang Juo; John R Kelsoe; David Lambert; Christoph Lange; Bernard Lerer; Jianjun Liu; Wolfgang Maier; James D Mackinnon; Melvin G McInnis; Francis J McMahon; Dennis L Murphy; Markus M Nothen; John I Nurnberger; Carlos N Pato; Michele T Pato; James B Potash; Peter Propping; Ann E Pulver; John P Rice; Marcella Rietschel; William Scheftner; Johannes Schumacher; Ricardo Segurado; Kristel Van Steen; Weiting Xie; Peter P Zandi; Nan M Laird
Journal:  Am J Hum Genet       Date:  2005-08-15       Impact factor: 11.025

4.  Robust estimation of experimentwise P values applied to a genome scan of multiple asthma traits identifies a new region of significant linkage on chromosome 20q13.

Authors:  Manuel A R Ferreira; Louise O'Gorman; Peter Le Souëf; Paul R Burton; Brett G Toelle; Colin F Robertson; Peter M Visscher; Nicholas G Martin; David L Duffy
Journal:  Am J Hum Genet       Date:  2005-10-14       Impact factor: 11.025

5.  Susceptibility genes for age-related maculopathy on chromosome 10q26.

Authors:  Johanna Jakobsdottir; Yvette P Conley; Daniel E Weeks; Tammy S Mah; Robert E Ferrell; Michael B Gorin
Journal:  Am J Hum Genet       Date:  2005-07-26       Impact factor: 11.025

6.  A map of the human genome in linkage disequilibrium units.

Authors:  W Tapper; A Collins; J Gibson; N Maniatis; S Ennis; N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-09       Impact factor: 11.205

7.  Susceptibility loci for adiposity phenotypes on 8p, 9p, and 16q in American Samoa and Samoa.

Authors:  Karolina Aberg; Feng Dai; Guangyun Sun; Ember D Keighley; Subba R Indugula; Sarah T Roberts; Qi Zhang; Diane Smelser; Satupaitea Viali; John Tuitele; Li Jin; Ranjan Deka; Daniel E Weeks; Stephen T McGarvey
Journal:  Obesity (Silver Spring)       Date:  2008-12-18       Impact factor: 5.002

8.  The mapping of DFNB62, a new locus for autosomal recessive non-syndromic hearing impairment, to chromosome 12p13.2-p11.23.

Authors:  G Ali; R L P Santos; P John; M A L Wambangco; K Lee; W Ahmad; Sm Leal
Journal:  Clin Genet       Date:  2006-05       Impact factor: 4.438

9.  Linkage and heritability analysis of migraine symptom groupings: a comparison of three different clustering methods on twin data.

Authors:  Carla C M Chen; Kerrie L Mengersen; Jonathan M Keith; Nicholas G Martin; Dale R Nyholt
Journal:  Hum Genet       Date:  2009-03-19       Impact factor: 4.132

10.  Evidence of a founder haplotype refines the X-linked Charcot-Marie-Tooth (CMTX3) locus to a 2.5 Mb region.

Authors:  Megan Brewer; Febriani Changi; Anthony Antonellis; Kurt Fischbeck; Patsie Polly; Garth Nicholson; Marina Kennerson
Journal:  Neurogenetics       Date:  2008-05-06       Impact factor: 2.660
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