Literature DB >> 17981733

Protein interactions and complexes in human microRNA biogenesis and function.

Marjorie P Perron1, Patrick Provost.   

Abstract

Encoded in the genome of most eukaryotes, microRNAs (miRNAs) have been proposed to regulate specifically up to 90% of human genes through a process known as miRNA-guided RNA silencing. The aim of this review is to present this process as the integration of a succession of specialized molecular machines exerting well defined functions. The nuclear microprocessor complex initially recognizes and processes its primary miRNA substrate into a miRNA precursor (pre-miRNA). This structure is then exported to the cytoplasm by the Exportin-5 complex where it is presented to the pre-miRNA processing complex. Following pre-miRNA conversion into a miRNA:miRNA* duplex, this complex is assembled into a miRNA-containing ribonucleoprotein (miRNP) complex, after which the miRNA strand is selected. The degree of complementarity of the miRNA for its messenger RNA (mRNA) target guides the recruitment of the miRNP complex. Initially repressing its translation, the miRNP-silenced mRNA is directed to the P-bodies, where the mRNA is either released from its inhibition upon a cellular signal and/or actively degraded. The potency and specificity of miRNA biogenesis and function rely on the distinct protein x protein, protein x RNA and RNA:RNA interactions found in different complexes, each of which fulfill a specific function in a well orchestrated process.

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Year:  2008        PMID: 17981733      PMCID: PMC2901379          DOI: 10.2741/2865

Source DB:  PubMed          Journal:  Front Biosci        ISSN: 1093-4715


  101 in total

1.  The carboxy-terminal, M3 motifs of PACT and TRBP have opposite effects on PKR activity.

Authors:  Vishal Gupta; Xu Huang; Rekha C Patel
Journal:  Virology       Date:  2003-10-25       Impact factor: 3.616

2.  MicroRNA genes are transcribed by RNA polymerase II.

Authors:  Yoontae Lee; Minju Kim; Jinju Han; Kyu-Hyun Yeom; Sanghyuk Lee; Sung Hee Baek; V Narry Kim
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

3.  Crystal structure of A. aeolicus argonaute, a site-specific DNA-guided endoribonuclease, provides insights into RISC-mediated mRNA cleavage.

Authors:  Yu-Ren Yuan; Yi Pei; Jin-Biao Ma; Vitaly Kuryavyi; Maria Zhadina; Gunter Meister; Hong-Ying Chen; Zbigniew Dauter; Thomas Tuschl; Dinshaw J Patel
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

4.  Structural basis for double-stranded RNA processing by Dicer.

Authors:  Ian J Macrae; Kaihong Zhou; Fei Li; Adrian Repic; Angela N Brooks; W Zacheus Cande; Paul D Adams; Jennifer A Doudna
Journal:  Science       Date:  2006-01-13       Impact factor: 47.728

5.  Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation.

Authors:  Tim A Rand; Sean Petersen; Fenghe Du; Xiaodong Wang
Journal:  Cell       Date:  2005-11-03       Impact factor: 41.582

6.  Molecular cloning and expression analysis of a novel gene DGCR8 located in the DiGeorge syndrome chromosomal region.

Authors:  Aiko Shiohama; Takashi Sasaki; Setsuko Noda; Shinsei Minoshima; Nobuyoshi Shimizu
Journal:  Biochem Biophys Res Commun       Date:  2003-04-25       Impact factor: 3.575

7.  Formation of GW bodies is a consequence of microRNA genesis.

Authors:  Kaleb M Pauley; Theophany Eystathioy; Andrew Jakymiw; John C Hamel; Marvin J Fritzler; Edward K L Chan
Journal:  EMBO Rep       Date:  2006-08-11       Impact factor: 8.807

8.  Oligomerization activity of a double-stranded RNA-binding domain.

Authors:  Edward G Hitti; Nina B Sallacz; Vera K Schoft; Michael F Jantsch
Journal:  FEBS Lett       Date:  2004-09-10       Impact factor: 4.124

9.  Merlin, a tumor suppressor, interacts with transactivation-responsive RNA-binding protein and inhibits its oncogenic activity.

Authors:  Joo Yong Lee; Hongtae Kim; Chung Hun Ryu; Jae Young Kim; Byung Hyune Choi; Young Lim; Pil-Woo Huh; Young-Hoon Kim; Kweon-Haeng Lee; Tae-Youn Jun; Hyung Kyun Rha; Joon-Ki Kang; Chang Rak Choi
Journal:  J Biol Chem       Date:  2004-04-27       Impact factor: 5.157

10.  Dicer is essential for mouse development.

Authors:  Emily Bernstein; Sang Yong Kim; Michelle A Carmell; Elizabeth P Murchison; Heather Alcorn; Mamie Z Li; Alea A Mills; Stephen J Elledge; Kathryn V Anderson; Gregory J Hannon
Journal:  Nat Genet       Date:  2003-10-05       Impact factor: 38.330

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  67 in total

1.  The potential role of microRNAs in regulating gonadal sex differentiation in the chicken embryo.

Authors:  Andrew D Cutting; Stephanie C Bannister; Tim J Doran; Andrew H Sinclair; Mark V L Tizard; Craig A Smith
Journal:  Chromosome Res       Date:  2012-01       Impact factor: 5.239

Review 2.  MicroRNAs as a molecular basis for mental retardation, Alzheimer's and prion diseases.

Authors:  Patrick Provost
Journal:  Brain Res       Date:  2010-03-27       Impact factor: 3.252

3.  Argonaute protein as a linker to command center of physiological processes.

Authors:  Kaifa Wei; Lingjuan Wu; Yanhui Chen; Yina Lin; Yanmei Wang; Xiaoyao Liu; Daoxin Xie
Journal:  Chin J Cancer Res       Date:  2013-08       Impact factor: 5.087

Review 4.  Regulation of spermatogenesis by small non-coding RNAs: role of the germ granule.

Authors:  Sara de Mateo; Paolo Sassone-Corsi
Journal:  Semin Cell Dev Biol       Date:  2014-04-19       Impact factor: 7.727

5.  Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs.

Authors:  Sabyasachi Dash; Muthukumar Balasubramaniam; Chandravanu Dash; Jui Pandhare
Journal:  J Vis Exp       Date:  2018-06-12       Impact factor: 1.355

Review 6.  miRNA-transcription factor interactions: a combinatorial regulation of gene expression.

Authors:  S Arora; R Rana; A Chhabra; A Jaiswal; V Rani
Journal:  Mol Genet Genomics       Date:  2013-01-20       Impact factor: 3.291

7.  MicroRNA expression in response to murine myocardial infarction: miR-21 regulates fibroblast metalloprotease-2 via phosphatase and tensin homologue.

Authors:  Sashwati Roy; Savita Khanna; Syed-Rehan A Hussain; Sabyasachi Biswas; Ali Azad; Cameron Rink; Surya Gnyawali; Shani Shilo; Gerard J Nuovo; Chandan K Sen
Journal:  Cardiovasc Res       Date:  2009-01-15       Impact factor: 10.787

8.  Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.

Authors:  Tim R Mercer; Irfan A Qureshi; Solen Gokhan; Marcel E Dinger; Guangyu Li; John S Mattick; Mark F Mehler
Journal:  BMC Neurosci       Date:  2010-02-05       Impact factor: 3.288

9.  Characterization of the TRBP domain required for dicer interaction and function in RNA interference.

Authors:  Sylvanne M Daniels; Carlos E Melendez-Peña; Robert J Scarborough; Aïcha Daher; Helen S Christensen; Mohamed El Far; Damian F J Purcell; Sébastien Lainé; Anne Gatignol
Journal:  BMC Mol Biol       Date:  2009-05-07       Impact factor: 2.946

10.  Estrogen Regulation of MicroRNA Expression.

Authors:  Carolyn M Klinge
Journal:  Curr Genomics       Date:  2009-05       Impact factor: 2.236

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