Literature DB >> 17981209

Mapping of constitutional translocation breakpoints in renal cell cancer patients: identification of KCNIP4 as a candidate gene.

Anita Bonne1, Lilian Vreede, Roland P Kuiper, Danielle Bodmer, Corine Jansen, Marc Eleveld, Femke van Erp, Ger Arkesteijn, Nicoline Hoogerbrugge, Conny van Ravenswaaij, Eric F P M Schoenmakers, Ad Geurts van Kessel.   

Abstract

Our group and others had previously developed a high throughput procedure to map translocation breakpoints using chromosome flow sorting in conjunction with microarray-based comparative genomic hybridization (arrayCGH). Here we applied both conventional positional cloning and integrated arrayCGH procedures to the mapping of constitutional chromosome anomalies in four patients with renal cell cancer (RCC), three with a chromosome 3 translocation, and one with an insertion involving chromosome 3. In one of these patients, who was carrying a t(3;4)(p13;p15), the KCNIP4 gene was found to be disrupted. KCNIP4 belongs to a family of potassium channel-interacting proteins and is highly expressed in normal kidney cells. In addition, KCNIP4 splice variants have specifically been encountered in RCC.

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Year:  2007        PMID: 17981209     DOI: 10.1016/j.cancergencyto.2007.07.005

Source DB:  PubMed          Journal:  Cancer Genet Cytogenet        ISSN: 0165-4608


  7 in total

1.  Identification of lung cancer histology-specific variants applying Bayesian framework variant prioritization approaches within the TRICL and ILCCO consortia.

Authors:  Darren R Brenner; Christopher I Amos; Yonathan Brhane; Maria N Timofeeva; Neil Caporaso; Yufei Wang; David C Christiani; Heike Bickeböller; Ping Yang; Demetrius Albanes; Victoria L Stevens; Susan Gapstur; James McKay; Paolo Boffetta; David Zaridze; Neonilia Szeszenia-Dabrowska; Jolanta Lissowska; Peter Rudnai; Eleonora Fabianova; Dana Mates; Vladimir Bencko; Lenka Foretova; Vladimir Janout; Hans E Krokan; Frank Skorpen; Maiken E Gabrielsen; Lars Vatten; Inger Njølstad; Chu Chen; Gary Goodman; Mark Lathrop; Tõnu Vooder; Kristjan Välk; Mari Nelis; Andres Metspalu; Peter Broderick; Timothy Eisen; Xifeng Wu; Di Zhang; Wei Chen; Margaret R Spitz; Yongyue Wei; Li Su; Dong Xie; Jun She; Keitaro Matsuo; Fumihiko Matsuda; Hidemi Ito; Angela Risch; Joachim Heinrich; Albert Rosenberger; Thomas Muley; Hendrik Dienemann; John K Field; Olaide Raji; Ying Chen; John Gosney; Triantafillos Liloglou; Michael P A Davies; Michael Marcus; John McLaughlin; Irene Orlow; Younghun Han; Yafang Li; Xuchen Zong; Mattias Johansson; Geoffrey Liu; Shelley S Tworoger; Loic Le Marchand; Brian E Henderson; Lynne R Wilkens; Juncheng Dai; Hongbing Shen; Richard S Houlston; Maria T Landi; Paul Brennan; Rayjean J Hung
Journal:  Carcinogenesis       Date:  2015-09-10       Impact factor: 4.944

2.  Informed genome-wide association analysis with family history as a secondary phenotype identifies novel loci of lung cancer.

Authors:  Julia G Poirier; Paul Brennan; James D McKay; Margaret R Spitz; Heike Bickeböller; Angela Risch; Geoffrey Liu; Loic Le Marchand; Shelley Tworoger; John McLaughlin; Albert Rosenberger; Joachim Heinrich; Irene Brüske; Thomas Muley; Brian E Henderson; Lynne R Wilkens; Xuchen Zong; Yafang Li; Ke Hao; Wim Timens; Yohan Bossé; Don D Sin; Ma'en Obeidat; Christopher I Amos; Rayjean J Hung
Journal:  Genet Epidemiol       Date:  2015-01-19       Impact factor: 2.135

Review 3.  A Decade of GWAS Results in Lung Cancer.

Authors:  Yohan Bossé; Christopher I Amos
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2017-06-14       Impact factor: 4.254

Review 4.  Emerging roles for multifunctional ion channel auxiliary subunits in cancer.

Authors:  Alexander S Haworth; William J Brackenbury
Journal:  Cell Calcium       Date:  2019-04-25       Impact factor: 6.817

5.  Multi-phenotype genome-wide association studies of the Norfolk Island isolate implicate pleiotropic loci involved in chronic kidney disease.

Authors:  Ngan K Tran; Rodney A Lea; Samuel Holland; Quan Nguyen; Arti M Raghubar; Heidi G Sutherland; Miles C Benton; Larisa M Haupt; Nicholas B Blackburn; Joanne E Curran; John Blangero; Andrew J Mallett; Lyn R Griffiths
Journal:  Sci Rep       Date:  2021-09-30       Impact factor: 4.379

6.  Genetic variation as a long-distance modulator of RAD21 expression in humans.

Authors:  William Schierding; Julia A Horsfield; Justin O'Sullivan
Journal:  Sci Rep       Date:  2022-07-29       Impact factor: 4.996

Review 7.  Characterization of renal cell carcinoma-associated constitutional chromosome abnormalities by genome sequencing.

Authors:  Philip S Smith; James Whitworth; Hannah West; Jacqueline Cook; Carol Gardiner; Derek H K Lim; Patrick J Morrison; R Gordon Hislop; Emily Murray; Marc Tischkowitz; Anne Y Warren; Emma R Woodward; Eamonn R Maher
Journal:  Genes Chromosomes Cancer       Date:  2020-02-05       Impact factor: 5.006

  7 in total

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