Literature DB >> 17949748

Rad54 oligomers translocate and cross-bridge double-stranded DNA to stimulate synapsis.

Piero R Bianco1, Justin J Bradfield, Lauren R Castanza, Andrea N Donnelly.   

Abstract

Rad54 is a key component of the eukaryotic recombination machinery. Its presence in DNA strand-exchange reactions in vitro results in a significant stimulation of the overall reaction rate. Using untagged Rad54, we show that this stimulation can be attributed to enhancement of the formation of a key reaction intermediate known as DNA networks. Using a novel, single DNA molecule, dual-optical tweezers approach we show how Rad54 stimulates DNA network formation. We discovered that Rad54 oligomers possess a unique ability to cross-bridge or bind double-stranded DNA molecules positioned in close proximity. Further, Rad54 oligomers rapidly translocate double-stranded DNA while simultaneously inducing topological loops in the DNA at the locus of the oligomer. The combination of the cross-bridging and double-stranded DNA translocation activities of Rad54 stimulates the formation of DNA networks, leading to rapid and efficient DNA strand exchange by Rad51.

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Year:  2007        PMID: 17949748      PMCID: PMC2128729          DOI: 10.1016/j.jmb.2007.09.052

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  48 in total

Review 1.  Recombination: a frank view of exchanges and vice versa.

Authors:  J E Haber
Journal:  Curr Opin Cell Biol       Date:  2000-06       Impact factor: 8.382

2.  Rad51 uses one mechanism to drive DNA strand exchange in both directions.

Authors:  E A Namsaraev; P Berg
Journal:  J Biol Chem       Date:  2000-02-11       Impact factor: 5.157

3.  The type I restriction endonuclease EcoR124I, couples ATP hydrolysis to bidirectional DNA translocation.

Authors:  Piero R Bianco; Elizabeth M Hurley
Journal:  J Mol Biol       Date:  2005-09-30       Impact factor: 5.469

Review 4.  Mechanisms of eukaryotic DNA double strand break repair.

Authors:  Dana Cahill; Brian Connor; James P Carney
Journal:  Front Biosci       Date:  2006-05-01

5.  Terminal association of Rad54 protein with the Rad51-dsDNA filament.

Authors:  Konstantin Kiianitsa; Jachen A Solinger; Wolf-Dietrich Heyer
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

6.  Sequence-resolved detection of pausing by single RNA polymerase molecules.

Authors:  Kristina M Herbert; Arthur La Porta; Becky J Wong; Rachel A Mooney; Keir C Neuman; Robert Landick; Steven M Block
Journal:  Cell       Date:  2006-06-16       Impact factor: 41.582

7.  Characterization of the ATPase activity of the Escherichia coli RecG protein reveals that the preferred cofactor is negatively supercoiled DNA.

Authors:  Stephen L Slocum; Jackson A Buss; Yuji Kimura; Piero R Bianco
Journal:  J Mol Biol       Date:  2007-01-09       Impact factor: 5.469

8.  Visualization of Rad54, a chromatin remodeling protein, translocating on single DNA molecules.

Authors:  Ichiro Amitani; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Mol Cell       Date:  2006-07-07       Impact factor: 17.970

9.  Rad54 protein promotes branch migration of Holliday junctions.

Authors:  Dmitry V Bugreev; Olga M Mazina; Alexander V Mazin
Journal:  Nature       Date:  2006-07-02       Impact factor: 49.962

Review 10.  Rad54: the Swiss Army knife of homologous recombination?

Authors:  Wolf-Dietrich Heyer; Xuan Li; Michael Rolfsmeier; Xiao-Ping Zhang
Journal:  Nucleic Acids Res       Date:  2006-08-25       Impact factor: 16.971

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  12 in total

1.  Hop2-Mnd1 condenses DNA to stimulate the synapsis phase of DNA strand exchange.

Authors:  Roberto J Pezza; R Daniel Camerini-Otero; Piero R Bianco
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

2.  Laminar flow cells for single-molecule studies of DNA-protein interactions.

Authors:  Laurence R Brewer; Piero R Bianco
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

3.  Rad54 and Rdh54 occupy spatially and functionally distinct sites within the Rad51-ssDNA presynaptic complex.

Authors:  J Brooks Crickard; Youngho Kwon; Patrick Sung; Eric C Greene
Journal:  EMBO J       Date:  2020-08-13       Impact factor: 11.598

4.  Novel, fluorescent, SSB protein chimeras with broad utility.

Authors:  Juan Liu; Meerim Choi; Adam G Stanenas; Alicia K Byrd; Kevin D Raney; Christopher Cohan; Piero R Bianco
Journal:  Protein Sci       Date:  2011-04-27       Impact factor: 6.725

Review 5.  Repair of DNA double-strand breaks in plant meiosis: role of eukaryotic RecA recombinases and their modulators.

Authors:  Côme Emmenecker; Christine Mézard; Rajeev Kumar
Journal:  Plant Reprod       Date:  2022-06-01       Impact factor: 3.767

Review 6.  Insight into the biochemical mechanism of DNA helicases provided by bulk-phase and single-molecule assays.

Authors:  Piero R Bianco
Journal:  Methods       Date:  2021-12-08       Impact factor: 4.647

Review 7.  Visualizing protein-DNA interactions at the single-molecule level.

Authors:  Jovencio Hilario; Stephen C Kowalczykowski
Journal:  Curr Opin Chem Biol       Date:  2009-11-27       Impact factor: 8.822

Review 8.  Single molecule studies of homologous recombination.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Mol Biosyst       Date:  2008-09-29

9.  Rdh54/Tid1 inhibits Rad51-Rad54-mediated D-loop formation and limits D-loop length.

Authors:  Shanaya Shital Shah; Stella Hartono; Aurèle Piazza; Vanessa Som; William Wright; Frédéric Chédin; Wolf-Dietrich Heyer
Journal:  Elife       Date:  2020-11-13       Impact factor: 8.140

10.  PICH: a DNA translocase specially adapted for processing anaphase bridge DNA.

Authors:  Andreas Biebricher; Seiki Hirano; Erwin Peterman; Gijs J L Wuite; Ian D Hickson; Jacqueline H Enzlin; Nicola Wiechens; Werner W Streicher; Diana Huttner; Lily H-C Wang; Erich A Nigg; Tom Owen-Hughes; Ying Liu
Journal:  Mol Cell       Date:  2013-08-22       Impact factor: 17.970

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