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Literature DB >> 17947621

Medical i2b2 NLP smoking challenge: the A-Life system architecture and methodology.

Daniel T Heinze¹, Mark L Morsch, Brian C Potter, Ronald E Sheffer.

Abstract

We describe the architecture of LifeCode (A-Life Medical, Inc.), a natural language processing system for free-text clinical information extraction, our methodology in applying LifeCode to the i2b2 smoking challenge, and statistical measures for performance evaluation. Due to the limited test size and the coefficient of variation in the test standard, it is difficult to draw conclusions regarding the relative efficacy of approaches that were applied to this challenge.

Mesh：

Year: 2007 PMID： 17947621 PMCID： PMC2274871 DOI： 10.1197/jamia.M2438

Source DB: PubMed Journal: J Am Med Inform Assoc ISSN： 1067-5027 Impact factor: 4.497

1 in total

1. Assessing the accuracy of an automated coding system in emergency medicine.

Authors: W C Morris; D T Heinze; H R Warner Jr; A Primack; A E Morsch; R E Sheffer; M A Jennings; M L Morsch; M A Jimmink
Journal: Proc AMIA Symp Date: 2000

1 in total

15 in total

1. Mayo clinic smoking status classification system: extensions and improvements.

Authors: Sunghwan Sohn; Guergana K Savova
Journal: AMIA Annu Symp Proc Date: 2009-11-14

2. eQuality for all: Extending automated quality measurement of free text clinical narratives.

Authors: Steven H Brown; Peter L Elkin; S Trent Rosenbloom; Elliot Fielstein; Ted Speroff
Journal: AMIA Annu Symp Proc Date: 2008-11-06

Review 3. Recent progress in automatically extracting information from the pharmacogenomic literature.

Authors: Yael Garten; Adrien Coulet; Russ B Altman
Journal: Pharmacogenomics Date: 2010-10 Impact factor: 2.533

Review 4. Translational informatics: enabling high-throughput research paradigms.

Authors: Philip R O Payne; Peter J Embi; Chandan K Sen
Journal: Physiol Genomics Date: 2009-09-08 Impact factor: 3.107

5. Improving the Utility of Tobacco-Related Problem List Entries Using Natural Language Processing.

Authors: Daniel R Harris; Darren W Henderson; Alexandria Corbeau
Journal: AMIA Annu Symp Proc Date: 2021-01-25

6. Practical implementation of an existing smoking detection pipeline and reduced support vector machine training corpus requirements.

Authors: Richard Khor; Wai-Kuan Yip; Mathias Bressel; William Rose; Gillian Duchesne; Farshad Foroudi
Journal: J Am Med Inform Assoc Date: 2013-08-06 Impact factor: 4.497

Medical i2b2 NLP smoking challenge: the A-Life system architecture and methodology.

1. Assessing the accuracy of an automated coding system in emergency medicine.

1. Mayo clinic smoking status classification system: extensions and improvements.

2. eQuality for all: Extending automated quality measurement of free text clinical narratives.

Review 3. Recent progress in automatically extracting information from the pharmacogenomic literature.

Review 4. Translational informatics: enabling high-throughput research paradigms.

5. Improving the Utility of Tobacco-Related Problem List Entries Using Natural Language Processing.

6. Practical implementation of an existing smoking detection pipeline and reduced support vector machine training corpus requirements.

7. A study of transportability of an existing smoking status detection module across institutions.

8. Unlocking Data for Clinical Research - The German i2b2 Experience.

9. Repurposing the clinical record: can an existing natural language processing system de-identify clinical notes?

10. Description of a rule-based system for the i2b2 challenge in natural language processing for clinical data.