Literature DB >> 17943440

Multistage sampling for latent variable models.

Duncan C Thomas1.   

Abstract

I consider the design of multistage sampling schemes for epidemiologic studies involving latent variable models, with surrogate measurements of the latent variables on a subset of subjects. Such models arise in various situations: when detailed exposure measurements are combined with variables that can be used to assign exposures to unmeasured subjects; when biomarkers are obtained to assess an unobserved pathophysiologic process; or when additional information is to be obtained on confounding or modifying variables. In such situations, it may be possible to stratify the subsample on data available for all subjects in the main study, such as outcomes, exposure predictors, or geographic locations. Three circumstances where analytic calculations of the optimal design are possible are considered: (i) when all variables are binary; (ii) when all are normally distributed; and (iii) when the latent variable and its measurement are normally distributed, but the outcome is binary. In each of these cases, it is often possible to considerably improve the cost efficiency of the design by appropriate selection of the sampling fractions. More complex situations arise when the data are spatially distributed: the spatial correlation can be exploited to improve exposure assignment for unmeasured locations using available measurements on neighboring locations; some approaches for informative selection of the measurement sample using location and/or exposure predictor data are considered.

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Year:  2007        PMID: 17943440     DOI: 10.1007/s10985-007-9061-1

Source DB:  PubMed          Journal:  Lifetime Data Anal        ISSN: 1380-7870            Impact factor:   1.588


  26 in total

1.  Bias and efficiency in family-based gene-characterization studies: conditional, prospective, retrospective, and joint likelihoods.

Authors:  P Kraft; D C Thomas
Journal:  Am J Hum Genet       Date:  2000-03       Impact factor: 11.025

2.  Asthma in exercising children exposed to ozone: a cohort study.

Authors:  Rob McConnell; Kiros Berhane; Frank Gilliland; Stephanie J London; Talat Islam; W James Gauderman; Edward Avol; Helene G Margolis; John M Peters
Journal:  Lancet       Date:  2002-02-02       Impact factor: 79.321

3.  Bayesian modeling of complex metabolic pathways.

Authors:  David V Conti; Victoria Cortessis; John Molitor; Duncan C Thomas
Journal:  Hum Hered       Date:  2003       Impact factor: 0.444

4.  A mathematical model of the folate cycle: new insights into folate homeostasis.

Authors:  H Frederik Nijhout; Michael C Reed; Paula Budu; Cornelia M Ulrich
Journal:  J Biol Chem       Date:  2004-10-20       Impact factor: 5.157

5.  The need for a systematic approach to complex pathways in molecular epidemiology.

Authors:  Duncan C Thomas
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2005-03       Impact factor: 4.254

6.  Multiple imputation: review of theory, implementation and software.

Authors:  Ofer Harel; Xiao-Hua Zhou
Journal:  Stat Med       Date:  2007-07-20       Impact factor: 2.373

7.  Estimating equations for parameters in means and covariances of multivariate discrete and continuous responses.

Authors:  R L Prentice; L P Zhao
Journal:  Biometrics       Date:  1991-09       Impact factor: 2.571

Review 8.  Exposure measurement error: influence on exposure-disease. Relationships and methods of correction.

Authors:  D Thomas; D Stram; J Dwyer
Journal:  Annu Rev Public Health       Date:  1993       Impact factor: 21.981

Review 9.  Pharmacogenetics and folate metabolism -- a promising direction.

Authors:  Cornelia M Ulrich; Kim Robien; Rachel Sparks
Journal:  Pharmacogenomics       Date:  2002-05       Impact factor: 2.533

10.  Correction of logistic regression relative risk estimates and confidence intervals for random within-person measurement error.

Authors:  B Rosner; D Spiegelman; W C Willett
Journal:  Am J Epidemiol       Date:  1992-12-01       Impact factor: 4.897

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  8 in total

Review 1.  Gene--environment-wide association studies: emerging approaches.

Authors:  Duncan Thomas
Journal:  Nat Rev Genet       Date:  2010-04       Impact factor: 53.242

2.  Methodological Issues in Multistage Genome-wide Association Studies.

Authors:  Duncan C Thomas; Graham Casey; David V Conti; Robert W Haile; Juan Pablo Lewinger; Daniel O Stram
Journal:  Stat Sci       Date:  2009-11-01       Impact factor: 2.901

Review 3.  Use of pathway information in molecular epidemiology.

Authors:  Duncan C Thomas; David V Conti; James Baurley; Frederik Nijhout; Michael Reed; Cornelia M Ulrich
Journal:  Hum Genomics       Date:  2009-10       Impact factor: 4.639

Review 4.  Methods for investigating gene-environment interactions in candidate pathway and genome-wide association studies.

Authors:  Duncan Thomas
Journal:  Annu Rev Public Health       Date:  2010       Impact factor: 21.981

5.  Measurement Error in Spatial Exposure Models: Study Design Implications.

Authors:  Duncan C Thomas
Journal:  Environmetrics       Date:  2013-12-01       Impact factor: 1.900

6.  A pooling strategy to effectively use genotype data in quantitative traits genome-wide association studies.

Authors:  Wei Zhang; Aiyi Liu; Paul S Albert; Robert D Ashmead; Enrique F Schisterman; James L Mills
Journal:  Stat Med       Date:  2018-07-12       Impact factor: 2.373

7.  A latent unknown clustering integrating multi-omics data (LUCID) with phenotypic traits.

Authors:  Cheng Peng; Jun Wang; Isaac Asante; Stan Louie; Ran Jin; Lida Chatzi; Graham Casey; Duncan C Thomas; David V Conti
Journal:  Bioinformatics       Date:  2020-02-01       Impact factor: 6.937

Review 8.  Two-phase and family-based designs for next-generation sequencing studies.

Authors:  Duncan C Thomas; Zhao Yang; Fan Yang
Journal:  Front Genet       Date:  2013-12-13       Impact factor: 4.599

  8 in total

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