| Literature DB >> 17941976 |
Anneli Karlsson1, Amanda Nordigården, Jan-Ingvar Jönsson, Peter Söderkvist.
Abstract
BACKGROUND: The telomeric region of mouse chromosome 12 has previously shown frequent allelic loss in murine lymphoma. The Bcl11b gene has been identified and suggested as a candidate tumor suppressor gene within this region. In this study, we aimed to elucidate whether Bcl11b is mutated in lymphomas with allelic loss, and whether the mutations we detected conferred any effect on cell proliferation and apoptosis.Entities:
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Year: 2007 PMID: 17941976 PMCID: PMC2140266 DOI: 10.1186/1471-2407-7-195
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Primers used for mutation analysis, sequencing, cloning and mutagenesis of mouse Bcl11b.
| Fragment | Direction | Sequence (5'->3') | Size of PCR product (bp) | Annealing temp. (°C)/Cycles |
| ex1 | F | CGC ATC TGT GCA GCT TTC | 226 | 56/35 |
| R | CCG GCT GCA GAG AAA CTT | |||
| ex2a | F | TGT CTT CTC TGC CCC TTC C | 264 | 59/35 |
| R | CTT GTC CAG GAC CTT GTC GT | |||
| ex2b | F | ACC TGT GGC CAG TGT CAG AT | 300 | 59/35 |
| R | TAG GGA GGC AGC TTC AGC A | |||
| ex3 | F | GGC ACC ACT GAC CAG TCT TT | 377 | 61/35 |
| R | CTT TTT GAG TGG GGG ATG G | |||
| zfd1 | F | TGC TCA CAC TCT GCC TTT CTT | 291 | 59/35 |
| R | GCA GCA GGT TGA AAG GAT TG | |||
| ex4a | F | TGA ATT TCC TGG GGG ACA G | 283 | 60/35 |
| R | CTG TTG CCG GCC AGT TCT | |||
| prd | F | TCT CCT GCC ATG GAC TTC TC | 329 | 62/35 |
| R | TGG CAC TTG TAG GGC TTC TC | |||
| zfd2 | F | AGT CCC AAG TCC CCG TTC | 299 | 60/35 |
| R | CAG CTG AGA GCC CGT CGT | |||
| acd | F | ATG AAG ACG CAC ATG CAC AA | 289 | 64/35 |
| R | CAC GCC ACC TCC GTT CTC | |||
| ex4b | F | AGC ATG GAC TCG GAG CTG | 300 | 62/35 |
| R | AGC TGG AAA GGG CTC TGC | |||
| ex4c | F | GTG ATG CCG GAG CTG TTG | 291 | 59/35 |
| R | CCA GGA ATG GGT CCT TCA | |||
| ex4d | F | GTG TAC TCG CAG TGG CTC GT | 294 | 60/35 |
| R | GAC CTT GCC GCA GTA CTC AC | |||
| zfd3 | F | ACA CCT CAC CTG GGT GGT C | 274 | 59/35 |
| R | TCA TTA GTC AGC AAG TGT TCA CC | |||
| cloning | F | TTT GAA TTC ATG TCC CGC CGC AAA C | 2459 | 65/35 |
| R | TTT GCG GCC GCT TAG CTC CTC TCA GCC TGC TC | |||
| S778N | F | CTG GGA GGC CGA ACT CCA AGG AGG GC | 65/12 | |
| R | GCC CTC CTT GGA GTT CGG CCT CCC AG | |||
| K828T | F | GCA GAG CAG CAC GCT CAC GCG CCA C | 65/12 | |
| R | GTG GCG CGT GAG CGT GCT GCT CTG C | |||
| Y844C | F | GCA AGG AGG TGT GCC GCT GCG ACA TC | 65/12 | |
| R | GAT GTC GCA GCG GCA CAC CTC CTT GC | |||
| FS823 | F | CGA GCT GTG CAA CTA CGC GCT AAG AGC AGC AAG CTC ACG CG | 65/18 | |
| R | CGC GTG AGC TTG CTG CTC TTA GCG CGT AGT TGC ACA GCT CG |
Figure 1Overexpression of . (A) Expression of Bcl11b in FDC-P1 and cells transfected with the mutated versions K828T, S778N, Y844C and FS823 was detected by Western blot and RT-PCR. In the Western blot analysis, the human cell line Jurkat was included as a positive control. The two bands correspond to different isoforms of Bcl11b. (B) Cell viability was determined by staining with propidium iodide followed by flow cytometric analysis. Data shown are the mean ± SD (n = 6). (C) Proliferation of non-transfected FDC-P1 cells and FDC-P1 cells transfected with wild-type Bcl11b or the mutated versions (K828T, S778N or Y844C) was measured by [3H]-TdR incorporation (cpm × 10-3) after 72 hours of SCF-stimulation. Results are presented as mean ± SD (n = 3). FDCP1: 11.8 ± 1.7; wild-type Bcl11b: 4.4 ± 1.1; K828T: 37.5 ± 3.3; S778N: 19.3 ± 1.9; Y844C: 32.4 ± 0.9. (D) Cells were stained with CFSE and cultured for 72 hours in SCF, after which CFSE fluorescence was determined by flow cytometry. Histograms for the four different mutants K828T, S778N, Y844C and FS823 (K, S, Y and FS, respectively) are shown. CFSE fluorescence declines (shift to the left on the X-axis) as cell numbers increase. In each histogram, data from non-transfected FDC-P1 cells (F) and cells transfected with wild-type Bcl11b (wt) are overlaid for a comparison. Results are from one representative experiment of three performed.
Figure 2Allelic loss of the C3H allele or the B6 allele on chromosome 12 in BLF and DLF. Two polymorphic sites (729A>G and 1386G>A) were found in Bcl11b, confirming previously detected allelic loss in D12Mit181 and D12Mit133 [17]. Markers analyzed are shown on the left side of the chromosome and the distance of the marker from the centromere is presented on the right side of the chromosome. Black square indicates loss of the C3H allele; white circle indicates loss of the B6 allele; absence of circle or square indicates retention of heterozygosity. CEN, centromere; TEL, telomere.
Summary of genetic alterations of the Bcl11b gene in BLF and DLF.
| Samples | Mutations in | Mutations in | |
| Nucleotide | Amino acid | ||
| DLF | |||
| 1 | 2531A>G | Y844C | |
| 16 | 2483A>C | K828T | |
| BLF | |||
| 3 | 2483A>C | K828T | |
| 4 | 2483A>C | K828T | |
| 7 | N236S | ||
| 8 | C173F | ||
| 9 | Frameshift | ||
| 10 | H176L | ||
| 12 | Frameshift | ||
| 15 | 2483A>C | K828T | |
| 17 | 2467TGCGCGC>CTA | Frameshift in codon 823 | |
| 22 | 2333G>A | S778N | |
| 25 | R153G | ||
aMutations of p53 have previously been analyzed and reported [26].