Literature DB >> 17930640

Lattice dynamics of a protein crystal.

Lars Meinhold1, Franci Merzel, Jeremy C Smith.   

Abstract

All-atom lattice-dynamical calculations are reported for a crystalline protein, ribonuclease A. The sound velocities, density of states, heat capacity (C(V)) and thermal diffuse scattering are all consistent with available experimental data. C(V) proportional, variant T(1.68) for T < 35 K, significantly deviating from a Debye solid. In Bragg peak vicinity, inelastic scattering of x rays by phonons is found to originate from acoustic mode scattering. The results suggest an approach to protein crystal physics combining all-atom lattice-dynamical calculations with experiments on next-generation neutron sources.

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Year:  2007        PMID: 17930640     DOI: 10.1103/PhysRevLett.99.138101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

3.  Acoustic vibrations contribute to the diffuse scatter produced by ribosome crystals.

Authors:  Yury S Polikanov; Peter B Moore
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-09-26

4.  Application of elastic network models to proteins in the crystalline state.

Authors:  Demian Riccardi; Qiang Cui; George N Phillips
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

5.  REACH coarse-grained normal mode analysis of protein dimer interaction dynamics.

Authors:  Kei Moritsugu; Vandana Kurkal-Siebert; Jeremy C Smith
Journal:  Biophys J       Date:  2009-08-19       Impact factor: 4.033

6.  Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering.

Authors:  Michael E Wall; Andrew H Van Benschoten; Nicholas K Sauter; Paul D Adams; James S Fraser; Thomas C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

7.  Moving in the Right Direction: Protein Vibrations Steering Function.

Authors:  Katherine A Niessen; Mengyang Xu; Alessandro Paciaroni; Andrea Orecchini; Edward H Snell; Andrea G Markelz
Journal:  Biophys J       Date:  2017-03-14       Impact factor: 4.033

Review 8.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

9.  Biomolecular Solvation Structure Revealed by Molecular Dynamics Simulations.

Authors:  Michael E Wall; Gaetano Calabró; Christopher I Bayly; David L Mobley; Gregory L Warren
Journal:  J Am Chem Soc       Date:  2019-03-11       Impact factor: 15.419

10.  Diffuse X-ray scattering to model protein motions.

Authors:  Michael E Wall; Paul D Adams; James S Fraser; Nicholas K Sauter
Journal:  Structure       Date:  2014-02-04       Impact factor: 5.006

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