Literature DB >> 17928655

Efficient degradation and expression prioritization with small RNAs.

Namiko Mitarai1, Anna M C Andersson, Sandeep Krishna, Szabolcs Semsey, Kim Sneppen.   

Abstract

We build a simple model for feedback systems involving small RNA (sRNA) molecules based on the iron metabolism system in the bacterium E. coli, and compare it with the corresponding system in H. pylori which uses purely transcriptional regulation. This reveals several unique features of sRNA-based regulation that could be exploited by cells. Firstly, we show that sRNA regulation can maintain a smaller turnover of target mRNAs than transcriptional regulation, without sacrificing the speed of response to external shocks. Secondly, we propose that a single sRNA can prioritize the usage of different target mRNAs. This suggests that sRNA regulation would be more common in more complex systems which need to co-regulate many mRNAs efficiently.

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Year:  2007        PMID: 17928655     DOI: 10.1088/1478-3975/4/3/003

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  30 in total

1.  Multiple factors dictate target selection by Hfq-binding small RNAs.

Authors:  Chase L Beisel; Taylor B Updegrove; Ben J Janson; Gisela Storz
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

2.  Quantifying mRNA synthesis and decay rates using small RNAs.

Authors:  Vlad Elgart; Tao Jia; Rahul Kulkarni
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

3.  Quantifying negative feedback regulation by micro-RNAs.

Authors:  Shangying Wang; Sridhar Raghavachari
Journal:  Phys Biol       Date:  2011-08-10       Impact factor: 2.583

4.  Combinatorics of feedback in cellular uptake and metabolism of small molecules.

Authors:  Sandeep Krishna; Szabolcs Semsey; Kim Sneppen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

5.  Dynamic features of gene expression control by small regulatory RNAs.

Authors:  Namiko Mitarai; Julie-Anna M Benjamin; Sandeep Krishna; Szabolcs Semsey; Zsolt Csiszovszki; Eric Massé; Kim Sneppen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-16       Impact factor: 11.205

Review 6.  Bacterial transcriptomics: what is beyond the RNA horiz-ome?

Authors:  Marc Güell; Eva Yus; Maria Lluch-Senar; Luis Serrano
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

7.  Origins of binary gene expression in post-transcriptional regulation by microRNAs.

Authors:  I Bose; S Ghosh
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-15       Impact factor: 1.890

Review 8.  Regulatory RNAs in bacteria.

Authors:  Lauren S Waters; Gisela Storz
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

9.  Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments.

Authors:  Ugo Ala; Florian A Karreth; Carla Bosia; Andrea Pagnani; Riccardo Taulli; Valentine Léopold; Yvonne Tay; Paolo Provero; Riccardo Zecchina; Pier Paolo Pandolfi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-27       Impact factor: 11.205

10.  Transcriptional and post-transcriptional regulation of the Escherichia coli luxS mRNA; involvement of the sRNA MicA.

Authors:  Klas I Udekwu
Journal:  PLoS One       Date:  2010-10-18       Impact factor: 3.240

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