Literature DB >> 17924152

A theoretical study of zinc(II) interactions with amino acid models and peptide fragments.

Bartosz Trzaskowski1, Ludwik Adamowicz, Pierre A Deymier.   

Abstract

Density functional theory calculations have been employed to study the interaction between the Zn2+ ion and some standard amino acid models. The highest affinities towards the Zn2+ ion are predicted for serine, cysteine, and histidine. Relatively high affinities are reported also for proline and glutamate/aspartate residues. It was found that the zinc complexes with cysteine adopt a tetrahedral conformation. Conversely, complexes with one or two histidine moieties remain in an octahedral geometry, while those with three or more histidine groups adopt a square-planar geometry.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17924152     DOI: 10.1007/s00775-007-0306-y

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  12 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Medicinal inorganic chemistry: introduction.

Authors:  C Orvig; M J Abrams
Journal:  Chem Rev       Date:  1999-09-08       Impact factor: 60.622

3.  Density functional theory of biologically relevant metal centers.

Authors:  P E Siegbahn; M R Blomberg
Journal:  Annu Rev Phys Chem       Date:  1999       Impact factor: 12.703

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

5.  Metal binding and folding properties of a minimalist Cys2His2 zinc finger peptide.

Authors:  S F Michael; V J Kilfoil; M H Schmidt; B T Amann; J M Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-01       Impact factor: 11.205

6.  Calcium--a life and death signal.

Authors:  M J Berridge; M D Bootman; P Lipp
Journal:  Nature       Date:  1998-10-15       Impact factor: 49.962

7.  DNA-templated assembly and electrode attachment of a conducting silver wire.

Authors:  E Braun; Y Eichen; U Sivan; G Ben-Yoseph
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

Review 8.  Chemiosmotic coupling in oxidative and photosynthetic phosphorylation.

Authors:  P Mitchell
Journal:  Biol Rev Camb Philos Soc       Date:  1966-08

9.  Interaction of Cu(2+) with His-Val-His and of Zn(2+) with His-Val-Gly-Asp, two peptides surrounding metal ions in Cu,Zn-superoxide dismutase enzyme.

Authors:  A Myari; G Malandrinos; Y Deligiannakis; J C Plakatouras; N Hadjiliadis; Z Nagy; I Sòvágó
Journal:  J Inorg Biochem       Date:  2001-07       Impact factor: 4.155

Review 10.  Transition metals in control of gene expression.

Authors:  T V O'Halloran
Journal:  Science       Date:  1993-08-06       Impact factor: 47.728

View more
  17 in total

1.  Direct observation of dynamic mechanical regulation of DNA condensation by environmental stimuli.

Authors:  Amy Lee; Adam Karcz; Ryan Akman; Tai Zheng; Sara Kwon; Szu-Ting Chou; Sarah Sucayan; Lucas J Tricoli; Jason M Hustedt; Qixin Leng; Jason D Kahn; A James Mixson; Joonil Seog
Journal:  Angew Chem Int Ed Engl       Date:  2014-08-21       Impact factor: 15.336

2.  Effect of mutation on the stabilization energy of HIV-1 zinc fingers: a hybrid local self-consistent field/molecular mechanics investigation.

Authors:  Nedjoua Drici; Mohamed Abdelghani Krallafa
Journal:  J Biol Inorg Chem       Date:  2016-11-15       Impact factor: 3.358

3.  Porphyromonas gingivalis cysteine proteinase inhibition by kappa-casein peptides.

Authors:  Elena C Y Toh; Stuart G Dashper; N Laila Huq; Troy J Attard; Neil M O'Brien-Simpson; Yu-Yen Chen; Keith J Cross; David P Stanton; Rita A Paolini; Eric C Reynolds
Journal:  Antimicrob Agents Chemother       Date:  2010-12-20       Impact factor: 5.191

4.  Complete transformation of ZnO and CuO nanoparticles in culture medium and lymphocyte cells during toxicity testing.

Authors:  Angela Ivask; Kirk G Scheckel; Pankaj Kapruwan; Vicki Stone; Hong Yin; Nicolas H Voelcker; Enzo Lombi
Journal:  Nanotoxicology       Date:  2017-02-06       Impact factor: 5.913

5.  Glutathione and transition-metal homeostasis in Escherichia coli.

Authors:  Kerstin Helbig; Corinna Bleuel; Gerd J Krauss; Dietrich H Nies
Journal:  J Bacteriol       Date:  2008-06-06       Impact factor: 3.490

6.  Shared catalysis in virus entry and bacterial cell wall depolymerization.

Authors:  Daniel N Cohen; Yuk Y Sham; Greg D Haugstad; Ye Xiang; Michael G Rossmann; Dwight L Anderson; David L Popham
Journal:  J Mol Biol       Date:  2009-02-09       Impact factor: 5.469

7.  Effect of glycation on human serum albumin-zinc interaction: a biophysical study.

Authors:  Sarah Iqbal; Faizan Abul Qais; Md Maroof Alam; Imrana Naseem
Journal:  J Biol Inorg Chem       Date:  2018-04-04       Impact factor: 3.358

8.  Cloning and expressing a highly functional and substrate specific farnesoic acid o-methyltransferase from the Asian citrus psyllid (Diaphorina citri Kuwayama).

Authors:  Evelien Van Ekert; Robert G Shatters; Pierre Rougé; Charles A Powell; Guy Smagghe; Dov Borovsky
Journal:  FEBS Open Bio       Date:  2015-03-28       Impact factor: 2.693

9.  Phosphonate as a Stable Zinc-Binding Group for "Pathoblocker" Inhibitors of Clostridial Collagenase H (ColH).

Authors:  Katrin Voos; Esther Schönauer; Alaa Alhayek; Jörg Haupenthal; Anastasia Andreas; Rolf Müller; Rolf W Hartmann; Hans Brandstetter; Anna K H Hirsch; Christian Ducho
Journal:  ChemMedChem       Date:  2021-03-16       Impact factor: 3.466

10.  One-step instant synthesis of protein-conjugated quantum dots at room temperature.

Authors:  Xuewen He; Li Gao; Nan Ma
Journal:  Sci Rep       Date:  2013-10-02       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.