Literature DB >> 17922018

Comprehensive analysis of diverse ribonucleoprotein complexes.

Marlene Oeffinger1, Karen E Wei, Richard Rogers, Jeffrey A DeGrasse, Brian T Chait, John D Aitchison, Michael P Rout.   

Abstract

The study of the dynamic interactome of cellular ribonucleoprotein (RNP) particles has been hampered by severe methodological limitations. In particular, the affinity purification of intact RNP complexes from cell lysates suffers from RNA degradation, loss of interacting macromolecules and poor overall yields. Here we describe a rapid affinity-purification method for efficient isolation of the subcomplexes that dynamically organize different RNP biogenesis pathways in Saccharomyces cerevisiae. Our method overcomes many of the previous limitations to produce large RNP interactomes with almost no contamination.

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Year:  2007        PMID: 17922018     DOI: 10.1038/nmeth1101

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  157 in total

1.  Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels.

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Journal:  Biotechniques       Date:  2012-05       Impact factor: 1.993

2.  The evolutionarily conserved protein Las1 is required for pre-rRNA processing at both ends of ITS2.

Authors:  Stéphanie Schillewaert; Ludivine Wacheul; Frédéric Lhomme; Denis L J Lafontaine
Journal:  Mol Cell Biol       Date:  2011-11-14       Impact factor: 4.272

3.  A genomic integration method for the simultaneous visualization of endogenous mRNAs and their translation products in living yeast.

Authors:  Liora Haim-Vilmovsky; Noga Gadir; Rebecca H Herbst; Jeffrey E Gerst
Journal:  RNA       Date:  2011-10-24       Impact factor: 4.942

4.  Cdc73 subunit of Paf1 complex contains C-terminal Ras-like domain that promotes association of Paf1 complex with chromatin.

Authors:  Christopher G Amrich; Christopher P Davis; Walter P Rogal; Margaret K Shirra; Annie Heroux; Richard G Gardner; Karen M Arndt; Andrew P VanDemark
Journal:  J Biol Chem       Date:  2012-02-08       Impact factor: 5.157

5.  Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575.

Authors:  Sabine Figaro; Ludivine Wacheul; Stéphanie Schillewaert; Marc Graille; Emmeline Huvelle; Rémi Mongeard; Christiane Zorbas; Denis L J Lafontaine; Valérie Heurgué-Hamard
Journal:  Mol Cell Biol       Date:  2012-04-09       Impact factor: 4.272

6.  Nucleocytoplasmic transport: a role for nonspecific competition in karyopherin-nucleoporin interactions.

Authors:  Jaclyn Tetenbaum-Novatt; Loren E Hough; Roxana Mironska; Anna Sophia McKenney; Michael P Rout
Journal:  Mol Cell Proteomics       Date:  2012-02-22       Impact factor: 5.911

Review 7.  Nuclear functions of actin.

Authors:  Neus Visa; Piergiorgio Percipalle
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-17       Impact factor: 10.005

8.  Merging molecular electron microscopy and mass spectrometry by carbon film-assisted endoproteinase digestion.

Authors:  Florian M Richter; Bjoern Sander; Monika M Golas; Holger Stark; Henning Urlaub
Journal:  Mol Cell Proteomics       Date:  2010-06-08       Impact factor: 5.911

Review 9.  Proteomics on the rims: insights into the biology of the nuclear envelope and flagellar pocket of trypanosomes.

Authors:  Mark C Field; Vincent Adung'a; Samson Obado; Brian T Chait; Michael P Rout
Journal:  Parasitology       Date:  2012-02-06       Impact factor: 3.234

10.  Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes.

Authors:  Marine Dehecq; Laurence Decourty; Abdelkader Namane; Caroline Proux; Joanne Kanaan; Hervé Le Hir; Alain Jacquier; Cosmin Saveanu
Journal:  EMBO J       Date:  2018-10-01       Impact factor: 11.598

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