Literature DB >> 17921209

A geometric principle may guide self-assembly of fullerene cages from clathrin triskelia and from carbon atoms.

Stan Schein1, Michelle Sands-Kidner.   

Abstract

Clathrin triskelia and carbon atoms alike self-assemble into a limited selection of fullerene cages (with n three connected vertices, 3n/2 edges, 12 pentagonal faces, and (n-20)/2 hexagonal faces). We show that a geometric constraint-exclusion of head-to-tail dihedral angle discrepancies (DADs)-explains this limited selection as well as successful assembly into such closed cages in the first place. An edge running from a pentagon to a hexagon has a DAD, since the dihedral angles about the edge broaden from its pentagon (tail) end to its hexagon (head) end. Of the 21 configurations of a central face and surrounding faces, six have such DAD vectors arranged head-to-tail. Of the 5770 mathematically possible fullerene cages for n <or= 60, excluding those with any of the six configurations leaves just 15 cages plus buckminsterfullerene (n = 60), among them the known clathrin cages. Of the 216,739 mathematically possible cages for 60 < n <or= 84, just the 50 that obey the isolated-pentagon rule, among them known carbon cages, pass. The absence of likely fullerenes for some n (30,34,46,48,52-58,62-68) explains the abundance of certain cages, including buckminsterfullerene. These principles also suggest a "probable roads" path to self-assembly in place of pentagon-road and fullerene-road hypotheses.

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Year:  2007        PMID: 17921209      PMCID: PMC2186234          DOI: 10.1529/biophysj.107.110817

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

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  7 in total

1.  The physical basis for the head-to-tail rule that excludes most fullerene cages from self-assembly.

Authors:  Stan Schein; Michelle Sands-Kidner; Tara Friedrich
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

2.  Fourth class of convex equilateral polyhedron with polyhedral symmetry related to fullerenes and viruses.

Authors:  Stan Schein; James Maurice Gayed
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-10       Impact factor: 11.205

3.  Clathrin Assembly Regulated by Adaptor Proteins in Coarse-Grained Models.

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Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

4.  Unraveling protein-protein interactions in clathrin assemblies via atomic force spectroscopy.

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5.  A geometric constraint, the head-to-tail exclusion rule, may be the basis for the isolated-pentagon rule in fullerenes with more than 60 vertices.

Authors:  Stan Schein; Tara Friedrich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-02       Impact factor: 11.205

6.  Rule-based modelling provides an extendable framework for comparing candidate mechanisms underpinning clathrin polymerisation.

Authors:  Anatoly Sorokin; Katharina F Heil; J Douglas Armstrong; Oksana Sorokina
Journal:  Sci Rep       Date:  2018-04-04       Impact factor: 4.379

7.  Cryo-EM of multiple cage architectures reveals a universal mode of clathrin self-assembly.

Authors:  Kyle L Morris; Joseph R Jones; Mary Halebian; Shenping Wu; Michael Baker; Jean-Paul Armache; Amaurys Avila Ibarra; Richard B Sessions; Alexander D Cameron; Yifan Cheng; Corinne J Smith
Journal:  Nat Struct Mol Biol       Date:  2019-10-03       Impact factor: 15.369

  7 in total

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