Literature DB >> 17919899

Taking it step by step: mechanistic insights from structural studies of ubiquitin/ubiquitin-like protein modification pathways.

Allan D Capili1, Christopher D Lima.   

Abstract

Ubiquitin (Ub) and ubiquitin-like (Ubl) proteins regulate a diverse array of cellular pathways through post-translational attachment to protein substrates. Ub/Ubl-mediated signaling is initiated through E1, E2, and E3-mediated conjugation, transduced by proteins that recognize Ub/Ubl-modified substrates, and terminated by proteases which remove the Ub/Ubl from the substrate. Recent structural studies have elucidated mechanisms pertinent to Ub/Ubl conjugation, recognition, and deconjugation, highlighting essential steps during Ub/Ubl modification that illustrate common and divergent mechanistic themes within this important process.

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Year:  2007        PMID: 17919899      PMCID: PMC2174906          DOI: 10.1016/j.sbi.2007.08.018

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  50 in total

Review 1.  Mechanism and function of deubiquitinating enzymes.

Authors:  Alexander Y Amerik; Mark Hochstrasser
Journal:  Biochim Biophys Acta       Date:  2004-11-29

2.  Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1.

Authors:  Luisa Maria Lois; Christopher D Lima
Journal:  EMBO J       Date:  2005-01-20       Impact factor: 11.598

3.  Crystal structure of thymine DNA glycosylase conjugated to SUMO-1.

Authors:  Daichi Baba; Nobuo Maita; Jun-Goo Jee; Yasuhiro Uchimura; Hisato Saitoh; Kaoru Sugasawa; Fumio Hanaoka; Hidehito Tochio; Hidekazu Hiroaki; Masahiro Shirakawa
Journal:  Nature       Date:  2005-06-16       Impact factor: 49.962

Review 4.  The ubiquitin system.

Authors:  A Hershko; A Ciechanover
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

5.  A small ubiquitin-related polypeptide involved in targeting RanGAP1 to nuclear pore complex protein RanBP2.

Authors:  R Mahajan; C Delphin; T Guan; L Gerace; F Melchior
Journal:  Cell       Date:  1997-01-10       Impact factor: 41.582

6.  RanBP2 associates with Ubc9p and a modified form of RanGAP1.

Authors:  H Saitoh; R Pu; M Cavenagh; M Dasso
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

7.  Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14.

Authors:  Min Hu; Pingwei Li; Ling Song; Philip D Jeffrey; Tatiana A Chenova; Keith D Wilkinson; Robert E Cohen; Yigong Shi
Journal:  EMBO J       Date:  2005-10-06       Impact factor: 11.598

8.  Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex.

Authors:  David Reverter; Christopher D Lima
Journal:  Nature       Date:  2005-06-02       Impact factor: 49.962

Review 9.  Function and regulation of cullin-RING ubiquitin ligases.

Authors:  Matthew D Petroski; Raymond J Deshaies
Journal:  Nat Rev Mol Cell Biol       Date:  2005-01       Impact factor: 94.444

10.  SUMO-1 modification and its role in targeting the Ran GTPase-activating protein, RanGAP1, to the nuclear pore complex.

Authors:  M J Matunis; J Wu; G Blobel
Journal:  J Cell Biol       Date:  1998-02-09       Impact factor: 10.539

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  57 in total

1.  E2 conjugating enzyme selectivity and requirements for function of the E3 ubiquitin ligase CHIP.

Authors:  Sarah E Soss; Yuanyuan Yue; Sirano Dhe-Paganon; Walter J Chazin
Journal:  J Biol Chem       Date:  2011-04-25       Impact factor: 5.157

2.  Insights into ubiquitin-conjugating enzyme/ co-activator interactions from the structure of the Pex4p:Pex22p complex.

Authors:  Chris Williams; Marlene van den Berg; Santosh Panjikar; Will A Stanley; Ben Distel; Matthias Wilmanns
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

3.  SUMO takes control of a ubiquitin-specific protease.

Authors:  Firaz Mohideen; Christopher D Lima
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

4.  A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway.

Authors:  Christian D Schlieker; Annemarthe G Van der Veen; Jadyn R Damon; Eric Spooner; Hidde L Ploegh
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

5.  SUMOylation of hnRNP-K is required for p53-mediated cell-cycle arrest in response to DNA damage.

Authors:  Seong Won Lee; Moon Hee Lee; Jong Ho Park; Sung Hwan Kang; Hee Min Yoo; Seung Hyun Ka; Young Mi Oh; Young Joo Jeon; Chin Ha Chung
Journal:  EMBO J       Date:  2012-10-23       Impact factor: 11.598

6.  Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2.

Authors:  Tingting Ju; William Bocik; Ananya Majumdar; Joel R Tolman
Journal:  Proteins       Date:  2010-04

7.  Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligases.

Authors:  Jin Liu; Ruth Nussinov
Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

8.  A molecular basis for phosphorylation-dependent SUMO conjugation by the E2 UBC9.

Authors:  Firaz Mohideen; Allan D Capili; Parizad M Bilimoria; Tomoko Yamada; Azad Bonni; Christopher D Lima
Journal:  Nat Struct Mol Biol       Date:  2009-08-16       Impact factor: 15.369

9.  The mechanism of ubiquitination in the cullin-RING E3 ligase machinery: conformational control of substrate orientation.

Authors:  Jin Liu; Ruth Nussinov
Journal:  PLoS Comput Biol       Date:  2009-10-02       Impact factor: 4.475

10.  Active site remodelling accompanies thioester bond formation in the SUMO E1.

Authors:  Shaun K Olsen; Allan D Capili; Xuequan Lu; Derek S Tan; Christopher D Lima
Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

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