Literature DB >> 17910423

Solvent and solvent isotope effects on the vibrational cooling dynamics of a DNA base derivative.

Chris T Middleton1, Boiko Cohen, Bern Kohler.   

Abstract

Vibrational cooling by 9-methyladenine was studied in a series of solvents by femtosecond transient absorption spectroscopy. Signals at UV and near-UV probe wavelengths were assigned to hot ground state population created by ultrafast internal conversion following electronic excitation by a 267 nm pump pulse. A characteristic time for vibrational cooling was determined from bleach recovery signals at 250 nm. This time increases progressively in H2O (2.4 ps), D2O (4.2 ps), methanol (4.5 ps), and acetonitrile (13.1 ps), revealing a pronounced solvent effect on the dissipation of excess vibrational energy. The trend also indicates that the rate of cooling is enhanced in solvents with a dense network of hydrogen bonds. The faster rate of cooling seen in H2O vs D2O is noteworthy in view of the similar hydrogen bonding and macroscopic thermal properties of both liquids. We propose that the solvent isotope effect arises from differences in the rates of solute-solvent vibrational energy transfer. Given the similarities of the vibrational friction spectra of H2O and D2O at low frequencies, the solvent isotope effect may indicate that a considerable portion of the excess energy decays by exciting relatively high frequency (>/=700 cm-1) solvent modes.

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Year:  2007        PMID: 17910423     DOI: 10.1021/jp0740595

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  15 in total

1.  Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides.

Authors:  Chris T Middleton; Lauren E Buchanan; Emily B Dunkelberger; Martin T Zanni
Journal:  J Phys Chem Lett       Date:  2011-08-25       Impact factor: 6.475

2.  Deuterium isotope effect on excited-state dynamics in an alternating GC oligonucleotide.

Authors:  Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

3.  Time-resolved infrared spectroscopy of the lowest triplet state of thymine and thymidine.

Authors:  Patrick M Hare; Chris T Middleton; Kristin I Mertel; John M Herbert; Bern Kohler
Journal:  Chem Phys       Date:  2008-05-23       Impact factor: 2.348

4.  UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases.

Authors:  Tomohisa Takaya; Charlene Su; Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-22       Impact factor: 11.205

5.  The Time-Resolved Fluorescence Stokes Shift of Cucurbit[6]Uril Complexes with a Pyridinium Styryl Dye.

Authors:  N Kh Petrov; D A Ivanov; I V Kryukov; A D Svirida; Yu A Shandarov; M V Alfimov
Journal:  J Fluoresc       Date:  2018-06-30       Impact factor: 2.217

6.  The excited-state lifetimes in a G x C DNA duplex are nearly independent of helix conformation and base-pairing motif.

Authors:  Kimberly de la Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

Review 7.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

8.  Modelling multi-pulse population dynamics from ultrafast spectroscopy.

Authors:  Luuk J G W van Wilderen; Craig N Lincoln; Jasper J van Thor
Journal:  PLoS One       Date:  2011-03-21       Impact factor: 3.240

9.  Photophysical properties and singlet oxygen generation of meso-iodinated free-base corroles.

Authors:  Fang Zhao; Xuan Zhan; Shu-Hui Lai; Lei Zhang; Hai-Yang Liu
Journal:  RSC Adv       Date:  2019-04-24       Impact factor: 4.036

10.  Direct observation of coherent oscillations in solution due to microheterogeneous environment.

Authors:  Dipak Kumar Das; Krishnandu Makhal; Soumendra Nath Bandyopadhyay; Debabrata Goswami
Journal:  Sci Rep       Date:  2014-08-18       Impact factor: 4.379

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