Literature DB >> 17909289

Human tRNA(Gly) acceptor-stem microhelix: crystallization and preliminary X-ray diffraction analysis at 1.2 A resolution.

Charlotte Förster1, Karol Szkaradkiewicz, Markus Perbandt, Arnd B E Brauer, Tordis Borowski, Jens P Fürste, Christian Betzel, Volker A Erdmann.   

Abstract

The major dissimilarities between the eukaryotic/archaebacterial-type and eubacterial-type glycyl-tRNA synthetase systems (GlyRS; class II aminoacyl-tRNA synthetases) represent an intriguing example of evolutionarily divergent solutions to similar biological functions. The differences in the identity elements of the respective tRNA(Gly) systems are located within the acceptor stem and include the discriminator base U73. In the present work, the human tRNA(Gly) acceptor-stem microhelix was crystallized in an attempt to analyze the structural features that govern the correct recognition of tRNA(Gly) by the eukaryotic/archaebacterial-type glycyl-tRNA synthetase. The crystals of the human tRNA(Gly) acceptor-stem helix belong to the monoclinic space group C2, with unit-cell parameters a = 37.12, b = 37.49, c = 30.38 A, alpha = gamma = 90, beta = 113.02 degrees, and contain one molecule per asymmetric unit. A high-resolution data set was acquired using synchrotron radiation and the data were processed to 1.2 A resolution.

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Year:  2007        PMID: 17909289      PMCID: PMC2339723          DOI: 10.1107/S1744309107041528

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  26 in total

1.  Disorder and twin refinement of RNA heptamer double helices.

Authors:  U Mueller; Y A Muller; R Herbst-Irmer; M Sprinzl; U Heinemann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-08

2.  Crystallization and X-ray diffraction data of a tRNASec acceptor-stem helix.

Authors:  C Förster; A Eickmann; U Schubert; S Hollmann; U Müller; U Heinemann; J P Fürste
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-03

3.  The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited.

Authors:  H Shi; P B Moore
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

4.  Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.

Authors:  U Mueller; H Schübel; M Sprinzl; U Heinemann
Journal:  RNA       Date:  1999-05       Impact factor: 4.942

5.  Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly.

Authors:  N R Voss; M Gerstein
Journal:  J Mol Biol       Date:  2005-01-05       Impact factor: 5.469

6.  Crystallization and preliminary X-ray diffraction analysis of a tRNASer acceptor-stem microhelix.

Authors:  Charlotte Förster; Norbert Krauss; Arnd B E Brauer; Karol Szkaradkiewicz; Svenja Brode; Klaus Hennig; Jens P Fürste; Markus Perbandt; Christian Betzel; Volker A Erdmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-31

7.  The first crystal structure of an RNA racemate.

Authors:  Wojciech Rypniewski; Marco Vallazza; Markus Perbandt; Sven Klussmann; Lawrence J Delucas; Christian Betzel; Volker A Erdmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-05-12

8.  Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition.

Authors:  A Ramos; G Varani
Journal:  Nucleic Acids Res       Date:  1997-06-01       Impact factor: 16.971

9.  Crystallization and preliminary X-ray diffraction analysis of an Escherichia coli tRNA(Gly) acceptor-stem microhelix.

Authors:  Charlotte Förster; Markus Perbandt; Arnd B E Brauer; Svenja Brode; Jens P Fürste; Christian Betzel; Volker A Erdmann
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-12-22

10.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  Mathias Sprinzl; Konstantin S Vassilenko
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  2 in total

1.  X-ray diffraction analysis of a human tRNA(Gly) acceptor-stem microhelix isoacceptor at 1.18 A resolution.

Authors:  André Eichert; Markus Perbandt; Angela Schreiber; Jens P Fürste; Christian Betzel; Volker A Erdmann; Charlotte Förster
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-12-25

Review 2.  Drugging tRNA aminoacylation.

Authors:  Joanne M Ho; Erol Bakkalbasi; Dieter Söll; Corwin A Miller
Journal:  RNA Biol       Date:  2018-02-02       Impact factor: 4.652

  2 in total

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