Literature DB >> 19216340

Patient-centered yes/no prognosis using learning machines.

I R König1, J D Malley, S Pajevic, C Weimar, H-C Diener, A Ziegler.   

Abstract

In the last 15 years several machine learning approaches have been developed for classification and regression. In an intuitive manner we introduce the main ideas of classification and regression trees, support vector machines, bagging, boosting and random forests. We discuss differences in the use of machine learning in the biomedical community and the computer sciences. We propose methods for comparing machines on a sound statistical basis. Data from the German Stroke Study Collaboration is used for illustration. We compare the results from learning machines to those obtained by a published logistic regression and discuss similarities and differences.

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Year:  2008        PMID: 19216340      PMCID: PMC2754835          DOI: 10.1504/ijdmb.2008.022149

Source DB:  PubMed          Journal:  Int J Data Min Bioinform        ISSN: 1748-5673            Impact factor:   0.667


  38 in total

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3.  Data mining, neural nets, trees--problems 2 and 3 of Genetic Analysis Workshop 15.

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Journal:  Genet Epidemiol       Date:  2007       Impact factor: 2.135

4.  Improved confidence intervals for the difference between binomial proportions based on paired data.

Authors:  R G Newcombe
Journal:  Stat Med       Date:  1998-11-30       Impact factor: 2.373

Review 5.  Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors.

Authors:  F E Harrell; K L Lee; D B Mark
Journal:  Stat Med       Date:  1996-02-28       Impact factor: 2.373

Review 6.  The risk of determining risk with multivariable models.

Authors:  J Concato; A R Feinstein; T R Holford
Journal:  Ann Intern Med       Date:  1993-02-01       Impact factor: 25.391

7.  Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients.

Authors:  Yinsheng Qu; Bao-Ling Adam; Yutaka Yasui; Michael D Ward; Lisa H Cazares; Paul F Schellhammer; Ziding Feng; O John Semmes; George L Wright
Journal:  Clin Chem       Date:  2002-10       Impact factor: 8.327

8.  Bias in random forest variable importance measures: illustrations, sources and a solution.

Authors:  Carolin Strobl; Anne-Laure Boulesteix; Achim Zeileis; Torsten Hothorn
Journal:  BMC Bioinformatics       Date:  2007-01-25       Impact factor: 3.169

9.  Information assessment on predicting protein-protein interactions.

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Journal:  BMC Bioinformatics       Date:  2004-10-18       Impact factor: 3.169

10.  Binary classification of dyslipidemia from the waist-to-hip ratio and body mass index: a comparison of linear, logistic, and CART models.

Authors:  Michael C Costanza; Fred Paccaud
Journal:  BMC Med Res Methodol       Date:  2004-04-06       Impact factor: 4.615

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  9 in total

1.  Data analysis and data mining: current issues in biomedical informatics.

Authors:  R Bellazzi; M Diomidous; I N Sarkar; K Takabayashi; A Ziegler; A T McCray
Journal:  Methods Inf Med       Date:  2011       Impact factor: 2.176

2.  On safari to Random Jungle: a fast implementation of Random Forests for high-dimensional data.

Authors:  Daniel F Schwarz; Inke R König; Andreas Ziegler
Journal:  Bioinformatics       Date:  2010-05-26       Impact factor: 6.937

Review 3.  Statistical learning approaches in the genetic epidemiology of complex diseases.

Authors:  Anne-Laure Boulesteix; Marvin N Wright; Sabine Hoffmann; Inke R König
Journal:  Hum Genet       Date:  2019-05-02       Impact factor: 4.132

4.  Optimal SVM parameter selection for non-separable and unbalanced datasets.

Authors:  Peng Jiang; Samy Missoum; Zhao Chen
Journal:  Struct Multidiscipl Optim       Date:  2014-10-01       Impact factor: 4.542

5.  Probability machines: consistent probability estimation using nonparametric learning machines.

Authors:  J D Malley; J Kruppa; A Dasgupta; K G Malley; A Ziegler
Journal:  Methods Inf Med       Date:  2011-09-14       Impact factor: 2.176

Review 6.  Risk estimation and risk prediction using machine-learning methods.

Authors:  Jochen Kruppa; Andreas Ziegler; Inke R König
Journal:  Hum Genet       Date:  2012-07-03       Impact factor: 4.132

7.  An introduction to recursive partitioning: rationale, application, and characteristics of classification and regression trees, bagging, and random forests.

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Journal:  Psychol Methods       Date:  2009-12

8.  Towards phenotyping stroke: Leveraging data from a large-scale epidemiological study to detect stroke diagnosis.

Authors:  Yizhao Ni; Kathleen Alwell; Charles J Moomaw; Daniel Woo; Opeolu Adeoye; Matthew L Flaherty; Simona Ferioli; Jason Mackey; Felipe De Los Rios La Rosa; Sharyl Martini; Pooja Khatri; Dawn Kleindorfer; Brett M Kissela
Journal:  PLoS One       Date:  2018-02-14       Impact factor: 3.240

9.  A novel framework for designing a multi-DoF prosthetic wrist control using machine learning.

Authors:  Chinmay P Swami; Nicholas Lenhard; Jiyeon Kang
Journal:  Sci Rep       Date:  2021-07-22       Impact factor: 4.379

  9 in total

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