Literature DB >> 17904693

Combining metabolic flux analysis tools and 13C NMR to estimate intracellular fluxes of cultured astrocytes.

Ana P Teixeira1, Sónia Sá Santos, Nuno Carinhas, Rui Oliveira, Paula M Alves.   

Abstract

In this work, brain cell metabolism was investigated by (13)C NMR spectroscopy and metabolic flux analysis (MFA). Monotypic cultures of astrocytes were incubated with labeled glucose for 38 h, and the distribution of the label was analyzed by (13)C NMR spectroscopy. The analysis of the spectra reveals two distinct physiological states characterized by different ratios of pyruvate carboxylase to pyruvate dehydrogenase activities (PC/PDH). Intracellular flux distributions for both metabolic states were estimated by MFA using the isotopic information and extracellular rate measurements as constraints. The model was subsequently checked with the consistency index method. From a biological point of view, the occurrence of the two physiological states appears to be correlated with the presence or absence of extracellular glutamate. Concerning the model, it can be stated that the metabolic network and the set of constraints adopted provide a consistent and robust characterization of the astrocytic metabolism, allowing for the calculation of central intracellular fluxes such as pyruvate recycling, the anaplerotic flux mediated by pyruvate carboxylase, and the glutamine formation through glutamine synthetase.

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Year:  2007        PMID: 17904693     DOI: 10.1016/j.neuint.2007.08.007

Source DB:  PubMed          Journal:  Neurochem Int        ISSN: 0197-0186            Impact factor:   3.921


  10 in total

1.  System estimation from metabolic time-series data.

Authors:  Gautam Goel; I-Chun Chou; Eberhard O Voit
Journal:  Bioinformatics       Date:  2008-09-04       Impact factor: 6.937

Review 2.  Structure, mechanism and regulation of pyruvate carboxylase.

Authors:  Sarawut Jitrapakdee; Martin St Maurice; Ivan Rayment; W Wallace Cleland; John C Wallace; Paul V Attwood
Journal:  Biochem J       Date:  2008-08-01       Impact factor: 3.857

Review 3.  Recent developments in parameter estimation and structure identification of biochemical and genomic systems.

Authors:  I-Chun Chou; Eberhard O Voit
Journal:  Math Biosci       Date:  2009-03-25       Impact factor: 2.144

Review 4.  Effects of hypoglycaemia on neuronal metabolism in the adult brain: role of alternative substrates to glucose.

Authors:  Ana I Amaral
Journal:  J Inherit Metab Dis       Date:  2012-10-30       Impact factor: 4.982

5.  Estimation of dynamic flux profiles from metabolic time series data.

Authors:  I-Chun Chou; Eberhard O Voit
Journal:  BMC Syst Biol       Date:  2012-07-09

6.  A comprehensive metabolic profile of cultured astrocytes using isotopic transient metabolic flux analysis and C-labeled glucose.

Authors:  Ana I Amaral; Ana P Teixeira; Bjørn I Håkonsen; Ursula Sonnewald; Paula M Alves
Journal:  Front Neuroenergetics       Date:  2011-09-07

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Authors:  João Miguel Freire; Ana Salomé Veiga; Thaís M Conceição; Wioleta Kowalczyk; Ronaldo Mohana-Borges; David Andreu; Nuno C Santos; Andrea T Da Poian; Miguel A R B Castanho
Journal:  PLoS One       Date:  2013-12-05       Impact factor: 3.240

Review 8.  Glutamine-Glutamate Cycle Flux Is Similar in Cultured Astrocytes and Brain and Both Glutamate Production and Oxidation Are Mainly Catalyzed by Aspartate Aminotransferase.

Authors:  Leif Hertz; Douglas L Rothman
Journal:  Biology (Basel)       Date:  2017-02-24

9.  Acidosis Maintains the Function of Brain Mitochondria in Hypoxia-Tolerant Triplefin Fish: A Strategy to Survive Acute Hypoxic Exposure?

Authors:  Jules B L Devaux; Christopher P Hedges; Nigel Birch; Neill Herbert; Gillian M C Renshaw; Anthony J R Hickey
Journal:  Front Physiol       Date:  2019-01-18       Impact factor: 4.566

Review 10.  Unraveling the complex metabolic nature of astrocytes.

Authors:  Anne-Karine Bouzier-Sore; Luc Pellerin
Journal:  Front Cell Neurosci       Date:  2013-10-11       Impact factor: 5.505

  10 in total

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