Literature DB >> 17896161

Statistical analysis of sets of random walks: how to resolve their generating mechanism.

Sylvie Coscoy1, Etienne Huguet, François Amblard.   

Abstract

The analysis of experimental random walks aims at identifying the process(es) that generate(s) them. It is in general a difficult task, because statistical dispersion within an experimental set of random walks is a complex combination of the stochastic nature of the generating process, and the possibility to have more than one simple process. In this paper, we study by numerical simulations how the statistical distribution of various geometric descriptors such as the second, third and fourth order moments of two-dimensional random walks depends on the stochastic process that generates that set. From these observations, we derive a method to classify complex sets of random walks, and resolve the generating process(es) by the systematic comparison of experimental moment distributions with those numerically obtained for candidate processes. In particular, various processes such as Brownian diffusion combined with convection, noise, confinement, anisotropy, or intermittency, can be resolved by using high order moment distributions. In addition, finite-size effects are observed that are useful for treating short random walks. As an illustration, we describe how the present method can be used to study the motile behavior of epithelial microvilli. The present work should be of interest in biology for all possible types of single particle tracking experiments.

Mesh:

Year:  2007        PMID: 17896161     DOI: 10.1007/s11538-007-9227-8

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  10 in total

1.  A Bayesian inference scheme to extract diffusivity and potential fields from confined single-molecule trajectories.

Authors:  Silvan Türkcan; Antigoni Alexandrou; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2012-05-15       Impact factor: 4.033

Review 2.  Random walk models in biology.

Authors:  Edward A Codling; Michael J Plank; Simon Benhamou
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

3.  Analysis of molecular diffusion by first-passage time variance identifies the size of confinement zones.

Authors:  Vishaal Rajani; Gustavo Carrero; David E Golan; Gerda de Vries; Christopher W Cairo
Journal:  Biophys J       Date:  2011-03-16       Impact factor: 4.033

4.  Quantifying biomolecule diffusivity using an optimal Bayesian method.

Authors:  Guillaume Voisinne; Antigoni Alexandrou; Jean-Baptiste Masson
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

5.  Mechanical boundary conditions bias fibroblast invasion in a collagen-fibrin wound model.

Authors:  Andrew D Rouillard; Jeffrey W Holmes
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

6.  Attaining the recesses of the cognitive space.

Authors:  David Papo
Journal:  Cogn Neurodyn       Date:  2021-11-20       Impact factor: 3.473

7.  Time series analysis of particle tracking data for molecular motion on the cell membrane.

Authors:  Wenxia Ying; Gabriel Huerta; Stanly Steinberg; Martha Zúñiga
Journal:  Bull Math Biol       Date:  2009-08-06       Impact factor: 1.758

8.  A role for Dynlt3 in melanosome movement, distribution, acidity and transfer.

Authors:  Zackie Aktary; Alejandro Conde-Perez; Florian Rambow; Mathilde Di Marco; François Amblard; Ilse Hurbain; Graça Raposo; Cédric Delevoye; Sylvie Coscoy; Lionel Larue
Journal:  Commun Biol       Date:  2021-03-26

9.  Modeling coral reef fish home range movements in Dry Tortugas, Florida.

Authors:  Nicholas A Farmer; Jerald S Ault
Journal:  ScientificWorldJournal       Date:  2014-01-16

10.  Bayesian decision tree for the classification of the mode of motion in single-molecule trajectories.

Authors:  Silvan Türkcan; Jean-Baptiste Masson
Journal:  PLoS One       Date:  2013-12-20       Impact factor: 3.240

  10 in total

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