Literature DB >> 17888611

Use of the DiversiLab semiautomated repetitive-sequence-based polymerase chain reaction for epidemiologic analysis on Acinetobacter baumannii isolates in different Italian hospitals.

Edoardo Carretto1, Daniela Barbarini, Claudio Farina, Alessia Grosini, Pierluigi Nicoletti, Esther Manso.   

Abstract

Acinetobacter baumannii is typically a nosocomial pathogen. Epidemiologic tools that can rapidly trace the spread of hospital-associated infections due to this microorganism are essential. Currently, amplified fragment length polymorphism and pulsed-field gel electrophoresis using ApaI, a macrorestriction enzyme, are the molecular techniques most widely used to type this microorganism. Unfortunately, they are technically demanding, requiring also well-trained personnel, and are time consuming. The aims of this study are 1) to evaluate the usefulness of the semiautomated repetitive-sequence-based polymerase chain reaction (rep-PCR) for typing A. baumannii, comparing this method with another semiautomated technique, such as ribotyping, and 2) to acquire information about the incidence, the clinical significance, and the susceptibility patterns of this microorganism in 13 different Italian hospitals in a 4-week period (total study population, >14000 beds). Twenty-eight A. baumannii were isolated in 7 different hospitals; 21 strains were analyzed with molecular methods. Automated ribotyping distinguished 6 different clusters of isolates, whereas rep-PCR appeared to be more discriminating, allowing us to distinguish 8 different clusters. Our study confirms the good discriminatory power of the semiautomated rep-PCR. Although expensive, this method is simple, fast, and reproducible, and in our opinion, it could be used in a hierarchic approach as a 1st-line typing tool if results of analysis are required in a short period or if a large number of isolates have to be analyzed.

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Year:  2007        PMID: 17888611     DOI: 10.1016/j.diagmicrobio.2007.07.002

Source DB:  PubMed          Journal:  Diagn Microbiol Infect Dis        ISSN: 0732-8893            Impact factor:   2.803


  15 in total

1.  Controlled performance evaluation of the DiversiLab repetitive-sequence-based genotyping system for typing multidrug-resistant health care-associated bacterial pathogens.

Authors:  Ariane Deplano; Olivier Denis; Hector Rodriguez-Villalobos; Raf De Ryck; Marc J Struelens; Marie Hallin
Journal:  J Clin Microbiol       Date:  2011-08-03       Impact factor: 5.948

2.  Clustering of clinical and environmental Escherichia coli O104 isolates using the DiversiLab™ repetitive sequence-based PCR system.

Authors:  N M Herbold; L M Clotilde; K M Anderson; J Kase; G L Hartman; S Himathongkham; A Lin; C R Lauzon
Journal:  Curr Microbiol       Date:  2014-12-02       Impact factor: 2.188

3.  Evaluation of the DiversiLab system for detection of hospital outbreaks of infections by different bacterial species.

Authors:  A C Fluit; A M Terlingen; L Andriessen; R Ikawaty; R van Mansfeld; J Top; J W Cohen Stuart; M A Leverstein-van Hall; C H E Boel
Journal:  J Clin Microbiol       Date:  2010-09-22       Impact factor: 5.948

4.  Emergence of colistin resistance in Enterobacteriaceae after the introduction of selective digestive tract decontamination in an intensive care unit.

Authors:  Teysir Halaby; Nashwan Al Naiemi; Jan Kluytmans; Job van der Palen; Christina M J E Vandenbroucke-Grauls
Journal:  Antimicrob Agents Chemother       Date:  2013-04-29       Impact factor: 5.191

5.  Comparative evaluation of an automated repetitive-sequence-based PCR instrument versus pulsed-field gel electrophoresis in the setting of a Serratia marcescens nosocomial infection outbreak.

Authors:  Marco Ligozzi; Roberta Fontana; Marco Aldegheri; Giovanna Scalet; Giuliana Lo Cascio
Journal:  J Clin Microbiol       Date:  2010-03-17       Impact factor: 5.948

6.  Interlaboratory reproducibility of DiversiLab rep-PCR typing and clustering of Acinetobacter baumannii isolates.

Authors:  Paul G Higgins; Andrea M Hujer; Kristine M Hujer; Robert A Bonomo; Harald Seifert
Journal:  J Med Microbiol       Date:  2011-09-08       Impact factor: 2.472

7.  Evidence of a clonal expansion of Streptococcus pneumoniae serotype 19A in adults as in children assessed by the DiversiLab® system.

Authors:  O Hurmic; N Grall; M Al Nakib; C Poyart; S Grondin; M-C Ploy; E Varon; J Raymond
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2014-06-15       Impact factor: 3.267

8.  Reliability of Pseudomonas aeruginosa semi-automated rep-PCR genotyping in various epidemiological situations.

Authors:  A Doléans-Jordheim; B Cournoyer; E Bergeron; J Croizé; H Salord; J André; M-A Mazoyer; F N R Renaud; J Freney
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2009-05-16       Impact factor: 3.267

9.  Characterization of blaKPC-containing Klebsiella pneumoniae isolates detected in different institutions in the Eastern USA.

Authors:  Andrea Endimiani; Andrea M Hujer; Federico Perez; Christopher R Bethel; Kristine M Hujer; Jennifer Kroeger; Margret Oethinger; David L Paterson; Mark D Adams; Michael R Jacobs; Daniel J Diekema; Gerri S Hall; Stephen G Jenkins; Louis B Rice; Fred C Tenover; Robert A Bonomo
Journal:  J Antimicrob Chemother       Date:  2009-01-20       Impact factor: 5.790

10.  Comparison of an automated repetitive sequence-based PCR microbial typing system with IS6110-restriction fragment length polymorphism for epidemiologic investigation of clinical Mycobacterium tuberculosis isolates in Korea.

Authors:  Mi Hee Jang; Go Eun Choi; Bo-Moon Shin; Seon Ho Lee; Sung-Ryul Kim; Chulhun L Chang; Jeong-Man Kim
Journal:  Korean J Lab Med       Date:  2011-10-03
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