Literature DB >> 17884714

Histone modifications and dynamic regulation of genome accessibility in plants.

Jennifer Pfluger1, Doris Wagner.   

Abstract

In all eukaryotes chromatin physically restricts the accessibility of the genome to regulatory proteins such as transcription factors. Plant model systems have been instrumental in demonstrating that this restriction is dynamic and changes during development and in response to exogenous cues. Among the multiple epigenetic mechanisms that alter chromatin to regulate gene expression, histone modifications play a major role. Recent studies in Arabidopsis have provided the first genome-wide histone modification maps, revealed important biological roles for histone modifications, and advanced our understanding of stimulus-dependent changes in histone modifications.

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Year:  2007        PMID: 17884714      PMCID: PMC2140274          DOI: 10.1016/j.pbi.2007.07.013

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  77 in total

Review 1.  Roles of dynamic and reversible histone acetylation in plant development and polyploidy.

Authors:  Z Jeffrey Chen; Lu Tian
Journal:  Biochim Biophys Acta       Date:  2007-05-03

Review 2.  Plant SET domain-containing proteins: structure, function and regulation.

Authors:  Danny W-K Ng; Tao Wang; Mahesh B Chandrasekharan; Rodolfo Aramayo; Sunee Kertbundit; Timothy C Hall
Journal:  Biochim Biophys Acta       Date:  2007-04-12

3.  A chromatin landmark and transcription initiation at most promoters in human cells.

Authors:  Matthew G Guenther; Stuart S Levine; Laurie A Boyer; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2007-07-13       Impact factor: 41.582

Review 4.  Rules and regulation in the primary structure of chromatin.

Authors:  Oliver J Rando; Kami Ahmad
Journal:  Curr Opin Cell Biol       Date:  2007-04-26       Impact factor: 8.382

Review 5.  Unwinding chromatin for development and growth: a few genes at a time.

Authors:  Chang Seob Kwon; Doris Wagner
Journal:  Trends Genet       Date:  2007-06-12       Impact factor: 11.639

6.  Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36.

Authors:  Zhong Zhao; Yu Yu; Denise Meyer; Chengjun Wu; Wen-Hui Shen
Journal:  Nat Cell Biol       Date:  2005-11-20       Impact factor: 28.824

7.  Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis.

Authors:  Cheng-Ran Xu; Cui Liu; Yi-Lan Wang; Lin-Chen Li; Wen-Qian Chen; Zhi-Hong Xu; Shu-Nong Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-21       Impact factor: 11.205

8.  The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin.

Authors:  Kenji Nakahigashi; Zuzana Jasencakova; Ingo Schubert; Koji Goto
Journal:  Plant Cell Physiol       Date:  2005-08-29       Impact factor: 4.927

9.  Mutations in the Type II protein arginine methyltransferase AtPRMT5 result in pleiotropic developmental defects in Arabidopsis.

Authors:  Yanxi Pei; Lifang Niu; Falong Lu; Chunyan Liu; Jixian Zhai; Xiangfeng Kong; Xiaofeng Cao
Journal:  Plant Physiol       Date:  2007-06-15       Impact factor: 8.340

10.  The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription.

Authors:  Deyarina Gonzalez; Adam J Bowen; Thomas S Carroll; R Steven Conlan
Journal:  Mol Cell Biol       Date:  2007-05-25       Impact factor: 4.272

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  86 in total

1.  Regulation by polycomb and trithorax group proteins in Arabidopsis.

Authors:  Raúl Alvarez-Venegas
Journal:  Arabidopsis Book       Date:  2010-05-08

Review 2.  Genomic basis for light control of plant development.

Authors:  Jigang Li; William Terzaghi; Xing Wang Deng
Journal:  Protein Cell       Date:  2012-03-17       Impact factor: 14.870

3.  Alterations of histone modifications at the senescence-associated gene HvS40 in barley during senescence.

Authors:  Nicole Ay; Bianka Janack; Andreas Fischer; Gunter Reuter; Klaus Humbeck
Journal:  Plant Mol Biol       Date:  2015-08-07       Impact factor: 4.076

4.  Histone modifications associated with drought tolerance in the desert plant Zygophyllum dumosum Boiss.

Authors:  Gila Granot; Noga Sikron-Persi; Ofer Gaspan; Assa Florentin; Susheela Talwara; Laju K Paul; Yaakov Morgenstern; Yigal Granot; Gideon Grafi
Journal:  Planta       Date:  2009-10-07       Impact factor: 4.116

5.  Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

Authors:  Kerstin Kaufmann; Jose M Muiño; Magne Østerås; Laurent Farinelli; Pawel Krajewski; Gerco C Angenent
Journal:  Nat Protoc       Date:  2010-02-18       Impact factor: 13.491

6.  The Histone Deacetylase Complex 1 Protein of Arabidopsis Has the Capacity to Interact with Multiple Proteins Including Histone 3-Binding Proteins and Histone 1 Variants.

Authors:  Giorgio Perrella; Craig Carr; Maria A Asensi-Fabado; Naomi A Donald; Katalin Páldi; Matthew A Hannah; Anna Amtmann
Journal:  Plant Physiol       Date:  2016-03-07       Impact factor: 8.340

Review 7.  HD2-type histone deacetylases: unique regulators of plant development and stress responses.

Authors:  Muhammad Sufyan Tahir; Lining Tian
Journal:  Plant Cell Rep       Date:  2021-05-26       Impact factor: 4.570

8.  The histone acetyltransferase GCN5 affects the inflorescence meristem and stamen development in Arabidopsis.

Authors:  Ross Cohen; John Schocken; Athanasios Kaldis; Konstantinos E Vlachonasios; Amy T Hark; Elizabeth R McCain
Journal:  Planta       Date:  2009-09-22       Impact factor: 4.116

9.  The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants.

Authors:  Cristel C Carles; Jennifer C Fletcher
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

10.  Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression.

Authors:  Junli Zhou; Xiangfeng Wang; Kun He; Jean-Benoit F Charron; Axel A Elling; Xing Wang Deng
Journal:  Plant Mol Biol       Date:  2010-04       Impact factor: 4.076

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