Literature DB >> 22426979

Genomic basis for light control of plant development.

Jigang Li1, William Terzaghi, Xing Wang Deng.   

Abstract

Light is one of the key environmental signals regulating plant growth and development. Therefore, understanding the mechanisms by which light controls plant development has long been of great interest to plant biologists. Traditional genetic and molecular approaches have successfully identified key regulatory factors in light signaling, but recent genomic studies have revealed massive reprogramming of plant transcriptomes by light, identified binding sites across the entire genome of several pivotal transcription factors in light signaling, and discovered the involvement of epigenetic regulation in light-regulated gene expression. This review summarizes the key genomic work conducted in the last decade which provides new insights into light control of plant development.

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Year:  2012        PMID: 22426979      PMCID: PMC4875414          DOI: 10.1007/s13238-012-2016-7

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  126 in total

1.  Direct interaction of Arabidopsis cryptochromes with COP1 in light control development.

Authors:  H Wang; L G Ma; J M Li; H Y Zhao; X W Deng
Journal:  Science       Date:  2001-08-16       Impact factor: 47.728

2.  COP1, an Arabidopsis regulatory gene, encodes a protein with both a zinc-binding motif and a G beta homologous domain.

Authors:  X W Deng; M Matsui; N Wei; D Wagner; A M Chu; K A Feldmann; P H Quail
Journal:  Cell       Date:  1992-11-27       Impact factor: 41.582

3.  HFR1 is targeted by COP1 E3 ligase for post-translational proteolysis during phytochrome A signaling.

Authors:  In-Cheol Jang; Jun-Yi Yang; Hak Soo Seo; Nam-Hai Chua
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

4.  Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

Authors:  Gang Li; Hamad Siddiqui; Yibo Teng; Rongcheng Lin; Xiang-yuan Wan; Jigang Li; On-Sun Lau; Xinhao Ouyang; Mingqiu Dai; Jianmin Wan; Paul F Devlin; Xing Wang Deng; Haiyang Wang
Journal:  Nat Cell Biol       Date:  2011-04-17       Impact factor: 28.824

5.  Phytochromes.

Authors:  Peter H Quail
Journal:  Curr Biol       Date:  2010-06-22       Impact factor: 10.834

6.  Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.

Authors:  Haiyang Wang; Xing Wang Deng
Journal:  EMBO J       Date:  2002-03-15       Impact factor: 11.598

7.  Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

Authors:  Jungeun Lee; Kun He; Viktor Stolc; Horim Lee; Pablo Figueroa; Ying Gao; Waraporn Tongprasit; Hongyu Zhao; Ilha Lee; Xing Wang Deng
Journal:  Plant Cell       Date:  2007-03-02       Impact factor: 11.277

8.  Gene expression profiling in response to ultraviolet radiation in maize genotypes with varying flavonoid content.

Authors:  Paula Casati; Virginia Walbot
Journal:  Plant Physiol       Date:  2003-08       Impact factor: 8.340

Review 9.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

10.  Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

Authors:  Moussa Benhamed; Marie-Laure Martin-Magniette; Ludivine Taconnat; Frédérique Bitton; Caroline Servet; Rebecca De Clercq; Björn De Meyer; Caroline Buysschaert; Stéphane Rombauts; Raimundo Villarroel; Sébastien Aubourg; Jim Beynon; Rishikesh P Bhalerao; George Coupland; Wilhelm Gruissem; Frank L H Menke; Bernd Weisshaar; Jean-Pierre Renou; Dao-Xiu Zhou; Pierre Hilson
Journal:  Plant J       Date:  2008-09-18       Impact factor: 6.417

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  27 in total

1.  Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs.

Authors:  Markus C Berns; Karl Nordström; Frédéric Cremer; Réka Tóth; Martin Hartke; Samson Simon; Jonas R Klasen; Ingmar Bürstel; George Coupland
Journal:  Plant Cell       Date:  2014-10-31       Impact factor: 11.277

2.  The COP9 signalosome: its regulation of cullin-based E3 ubiquitin ligases and role in photomorphogenesis.

Authors:  Cynthia D Nezames; Xing Wang Deng
Journal:  Plant Physiol       Date:  2012-06-19       Impact factor: 8.340

3.  Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.

Authors:  Yuqiu Wang; Xiuduo Fan; Fang Lin; Guangming He; William Terzaghi; Danmeng Zhu; Xing Wang Deng
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

4.  Differential TOR activation and cell proliferation in Arabidopsis root and shoot apexes.

Authors:  Xiaojuan Li; Wenguo Cai; Yanlin Liu; Hui Li; Liwen Fu; Zengyu Liu; Lin Xu; Hongtao Liu; Tongda Xu; Yan Xiong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

5.  Marker-trait association for low-light intensity tolerance in rice genotypes from Eastern India.

Authors:  Suvendhu S Dutta; Wricha Tyagi; Gratify Pale; Judith Pohlong; C Aochen; Avinash Pandey; Arunava Pattanayak; Mayank Rai
Journal:  Mol Genet Genomics       Date:  2018-08-07       Impact factor: 3.291

Review 6.  Epigenetic and small RNA regulation of senescence.

Authors:  Klaus Humbeck
Journal:  Plant Mol Biol       Date:  2013-01-13       Impact factor: 4.076

7.  NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.

Authors:  Lulu Wang; Xianwei Song; Lianfeng Gu; Xin Li; Shouyun Cao; Chengcai Chu; Xia Cui; Xuemei Chen; Xiaofeng Cao
Journal:  Plant Cell       Date:  2013-02-19       Impact factor: 11.277

8.  Light in the transcription landscape: chromatin, RNA polymerase II and splicing throughout Arabidopsis thaliana's life cycle.

Authors:  Rocío S Tognacca; M Guillermina Kubaczka; Lucas Servi; Florencia S Rodríguez; Micaela A Godoy Herz; Ezequiel Petrillo
Journal:  Transcription       Date:  2020-08-04

9.  Phytochrome Coordinates with a hnRNP to Regulate Alternative Splicing via an Exonic Splicing Silencer.

Authors:  Bou-Yun Lin; Chueh-Ju Shih; Hsin-Yu Hsieh; Hsiu-Chen Chen; Shih-Long Tu
Journal:  Plant Physiol       Date:  2019-09-09       Impact factor: 8.340

10.  Identification of root transcriptional responses to shoot illumination in Arabidopsis thaliana.

Authors:  Yohanna Evelyn Miotto; Cibele Tesser da Costa; Ben Hur de Oliveira; Frank Guzman; Rogério Margis; Rita Maria Cunha de Almeida; Remko Offringa; Felipe Dos Santos Maraschin
Journal:  Plant Mol Biol       Date:  2019-09-27       Impact factor: 4.076

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