Literature DB >> 17884462

Engineering by homologous recombination: exploring sequence and function within a conserved fold.

Martina N Carbone1, Frances H Arnold.   

Abstract

In nature similar protein folds accommodate distant sequences and support diverse functions. This observation coupled with the recognition that proteins can tolerate many homologous substitutions inspires protein engineers to use recombination to search for new functions within sequences encoding structurally related molecules. These searches have led to proteins with novel activities, diversified specificities and greater stabilities. Computational methods that exploit structural and evolutionary information are being used to design highly mutated yet still natively folded chimeric proteins and protein libraries.

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Year:  2007        PMID: 17884462     DOI: 10.1016/j.sbi.2007.08.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  16 in total

1.  Recombination of protein fragments: a promising approach toward engineering proteins with novel nanomechanical properties.

Authors:  M M Balamurali; Deepak Sharma; Anderson Chang; Dingyue Khor; Ricky Chu; Hongbin Li
Journal:  Protein Sci       Date:  2008-07-14       Impact factor: 6.725

2.  Widely conserved recombination patterns among single-stranded DNA viruses.

Authors:  P Lefeuvre; J-M Lett; A Varsani; D P Martin
Journal:  J Virol       Date:  2008-12-30       Impact factor: 5.103

3.  Integrating terminal truncation and oligopeptide fusion for a novel protein engineering strategy to improve specific activity and catalytic efficiency: alkaline α-amylase as a case study.

Authors:  Haiquan Yang; Long Liu; Hyun-dong Shin; Rachel R Chen; Jianghua Li; Guocheng Du; Jian Chen
Journal:  Appl Environ Microbiol       Date:  2013-08-16       Impact factor: 4.792

Review 4.  Unparalleled control of neural activity using orthogonal pharmacogenetics.

Authors:  Mikhail G Shapiro; Shawnalea J Frazier; Henry A Lester
Journal:  ACS Chem Neurosci       Date:  2012-06-01       Impact factor: 4.418

5.  Design of protein function leaps by directed domain interface evolution.

Authors:  Jin Huang; Akiko Koide; Koki Makabe; Shohei Koide
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-29       Impact factor: 11.205

6.  A kinetic analysis of regiospecific glucosylation by two glycosyltransferases of Arabidopsis thaliana: domain swapping to introduce new activities.

Authors:  Adam M Cartwright; Eng-Kiat Lim; Colin Kleanthous; Dianna J Bowles
Journal:  J Biol Chem       Date:  2008-03-31       Impact factor: 5.157

7.  Biophysics of protein evolution and evolutionary protein biophysics.

Authors:  Tobias Sikosek; Hue Sun Chan
Journal:  J R Soc Interface       Date:  2014-11-06       Impact factor: 4.118

8.  A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.

Authors:  Lu He; Alan M Friedman; Chris Bailey-Kellogg
Journal:  Proteins       Date:  2011-12-16

Review 9.  Computational strategies for the design of new enzymatic functions.

Authors:  K Świderek; I Tuñón; V Moliner; J Bertran
Journal:  Arch Biochem Biophys       Date:  2015-03-19       Impact factor: 4.013

10.  SCHEMA computational design of virus capsid chimeras: calibrating how genome packaging, protection, and transduction correlate with calculated structural disruption.

Authors:  Michelle L Ho; Benjamin A Adler; Michael L Torre; Jonathan J Silberg; Junghae Suh
Journal:  ACS Synth Biol       Date:  2013-08-22       Impact factor: 5.110

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