Literature DB >> 17883341

The potential of metabolomics tools in bioremediation studies.

Silas Granato Villas-Bôas1, Per Bruheim.   

Abstract

As a post-genomics tool, metabolomics is a young and vibrant field of science in its exponential growth phase. Metabolome analysis has become very popular recently, and novel techniques for acquiring and analyzing metabolomics data continue to emerge that are useful for a variety of biological studies. The bioremediation field has a lot to gain from the advances in this emerging area. Thus, this review article focuses on the potential of various experimental and conceptual approaches developed for metabolomics to be applied in bioremediation research, such as strategies for elucidation of biodegradation pathways using isotope distribution analysis and molecular connectivity analysis, the assessment of mineralization process using metabolic footprinting analysis, and the improvement of the biodegradation process via metabolic engineering. We demonstrate how the use of metabolomics tools can significantly extend and enhance the power of existing bioremediation approaches by providing a better overview of the biodegradation process.

Mesh:

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Year:  2007        PMID: 17883341     DOI: 10.1089/omi.2007.0005

Source DB:  PubMed          Journal:  OMICS        ISSN: 1536-2310


  14 in total

Review 1.  Future perspectives of Chinese medical formulae: chinmedomics as an effector.

Authors:  Xijun Wang; Aihua Zhang; Hui Sun
Journal:  OMICS       Date:  2012-06-26

2.  Subpopulation-specific metabolic pathway usage in mixed cultures as revealed by reporter protein-based 13C analysis.

Authors:  Martin Rühl; Wolf-Dietrich Hardt; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

3.  Genomic tools in bioremediation.

Authors:  Atya Kapley; Hemant J Purohit
Journal:  Indian J Microbiol       Date:  2009-03-14       Impact factor: 2.461

4.  Dynamic phosphometabolomic profiling of human tissues and transgenic models by 18O-assisted ³¹P NMR and mass spectrometry.

Authors:  Emirhan Nemutlu; Song Zhang; Anu Gupta; Nenad O Juranic; Slobodan I Macura; Andre Terzic; Arshad Jahangir; Petras Dzeja
Journal:  Physiol Genomics       Date:  2012-01-10       Impact factor: 3.107

Review 5.  18O-assisted dynamic metabolomics for individualized diagnostics and treatment of human diseases.

Authors:  Emirhan Nemutlu; Song Zhang; Nenad O Juranic; Andre Terzic; Slobodan Macura; Petras Dzeja
Journal:  Croat Med J       Date:  2012-12       Impact factor: 1.351

6.  A molecular structure matching approach to efficient identification of endogenous mammalian biochemical structures.

Authors:  Mai A Hamdalla; Reda A Ammar; Sanguthevar Rajasekaran
Journal:  BMC Bioinformatics       Date:  2015-03-18       Impact factor: 3.169

7.  Intracellular Metabolite Pool Changes in Response to Nutrient Depletion Induced Metabolic Switching in Streptomyces coelicolor.

Authors:  Alexander Wentzel; Havard Sletta; Trond E Ellingsen; Per Bruheim
Journal:  Metabolites       Date:  2012-02-17

Review 8.  Metabolic Network Modeling of Microbial Interactions in Natural and Engineered Environmental Systems.

Authors:  Octavio Perez-Garcia; Gavin Lear; Naresh Singhal
Journal:  Front Microbiol       Date:  2016-05-18       Impact factor: 5.640

9.  Evaluation and characterization of bacterial metabolic dynamics with a novel profiling technique, real-time metabolotyping.

Authors:  Shinji Fukuda; Yumiko Nakanishi; Eisuke Chikayama; Hiroshi Ohno; Tsuneo Hino; Jun Kikuchi
Journal:  PLoS One       Date:  2009-03-16       Impact factor: 3.240

10.  Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites.

Authors:  Farai Maphosa; Shakti H Lieten; Inez Dinkla; Alfons J Stams; Hauke Smidt; Donna E Fennell
Journal:  Front Microbiol       Date:  2012-10-02       Impact factor: 5.640

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