Literature DB >> 23100758

Genomic tools in bioremediation.

Atya Kapley1, Hemant J Purohit.   

Abstract

Bioremediation is a process that uses microorganisms or their enzymes to remove pollutants from the environment. Generally, bioremediation technologies can be classified as in situ or ex situ. In situ bioremediation involves treating the contaminated material at the site while ex situ involves the removal of the contaminated material to be treated elsewhere. Like so much else in biology, the ease and availability of genomic data has created a new level of understanding this system. Bioremediation capabilities of the microbial population can be analyzed; not only by physiological parameters, but also by the use of genomic tools, and efficient remediation strategies can be planned. PCR and DNA- or oligonucleotide-based microarray technology is a powerful functional genomics tool that allows researchers to view the physiology of a living cell from a comprehensive and dynamic molecular perspective. This paper explores the use of such tools in bioremediation process.

Entities:  

Keywords:  Bioremediation; Catabolic potential; Metagenomics; Molecular tools

Year:  2009        PMID: 23100758      PMCID: PMC3450142          DOI: 10.1007/s12088-009-0012-2

Source DB:  PubMed          Journal:  Indian J Microbiol        ISSN: 0046-8991            Impact factor:   2.461


  42 in total

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Authors:  G Muyzer
Journal:  Curr Opin Microbiol       Date:  1999-06       Impact factor: 7.934

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Authors:  R Rosselló-Mora; R Amann
Journal:  FEMS Microbiol Rev       Date:  2001-01       Impact factor: 16.408

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Authors:  S Radajewski; P Ineson; N R Parekh; J C Murrell
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4.  Chemotaxis of Ralstonia sp. SJ98 towards p-nitrophenol in soil.

Authors:  Debarati Paul; Rajbir Singh; Rakesh K Jain
Journal:  Environ Microbiol       Date:  2006-10       Impact factor: 5.491

Review 5.  In situ bioremediation.

Authors:  Kirsten S Jørgensen
Journal:  Adv Appl Microbiol       Date:  2007       Impact factor: 5.086

6.  Enrichment of an endosulfan-degrading mixed bacterial culture.

Authors:  T D Sutherland; I Horne; M J Lacey; R L Harcourt; R J Russell; J G Oakeshott
Journal:  Appl Environ Microbiol       Date:  2000-07       Impact factor: 4.792

7.  Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov.

Authors:  Om Prakash; Rup Lal
Journal:  Int J Syst Evol Microbiol       Date:  2006-09       Impact factor: 2.747

8.  Enhanced biodegradation of hexachlorocyclohexane (HCH) in contaminated soils via inoculation with Sphingobium indicum B90A.

Authors:  Vishakha Raina; Mrutyunjay Suar; Ajaib Singh; Om Prakash; Mandeep Dadhwal; Sanjay Kumar Gupta; Charu Dogra; Kirsten Lawlor; Sukanya Lal; Jan Roelof van der Meer; Christof Holliger; Rup Lal
Journal:  Biodegradation       Date:  2007-03-27       Impact factor: 3.909

9.  Enhanced biodegradation of beta- and delta-hexachlorocyclohexane in the presence of alpha- and gamma-isomers in contaminated soils.

Authors:  Manish Kumar; Pankaj Chaudhary; Manish Dwivedi; Ranjan Kumar; Debarati Paul; Rakesh K Jain; Satyendra K Garg; Ashwani Kumar
Journal:  Environ Sci Technol       Date:  2005-06-01       Impact factor: 9.028

10.  Fatty Acid methyl ester profiles for characterization of glomalean fungi and their endomycorrhizae.

Authors:  J H Graham; N C Hodge; J B Morton
Journal:  Appl Environ Microbiol       Date:  1995-01       Impact factor: 4.792

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  2 in total

Review 1.  Mapping Microbial Capacities for Bioremediation: Genes to Genomics.

Authors:  Jung-Kul Lee; Vipin Chandra Kalia
Journal:  Indian J Microbiol       Date:  2019-11-20       Impact factor: 2.461

2.  Cloning of merA Gene from Methylotenera Mobilis for Mercury Biotransformation.

Authors:  Shalini Porwal; Rajni Singh
Journal:  Indian J Microbiol       Date:  2016-07-28       Impact factor: 2.461

  2 in total

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