Literature DB >> 17874

The organization and function of water in protein crystals.

J L Finney.   

Abstract

Dry proteins are dead, or at best asleep. Substitution of D2O can drastically alter biological activity. Water is thus essential in maintaining the structural integrity of biologically active macromolecules, and is implicated in their functioning. Such water may occupy a range of dynamical states, from being strongly bound and localized, to more labile and 'liquid-like'. Spatially ordering the macromolecules aids the search for the more localized water molecules. For example, diffraction experiments on singly crystals can resolve 'bound' water molecules within a protein molecule--ofter at active sites, coordinated to metals or ions. Less precise information is obtained on the partially occupied external water sites, which are of importance to the folding and dynamics of the biomolecule. Orientation of fibrous molecules increases the information obtainable from n.m.r. experiments. Combination of other experimental results on disordered aggregates (e.g. in solution) with chemical and structural data on the macromolecule and water itself yields useful, if circumstantial, information. Statistical and computer techniques may help to elucidate the complex nature of water-protein interactions, and to interpret the results of more complex experiments.

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Year:  1977        PMID: 17874     DOI: 10.1098/rstb.1977.0029

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  12 in total

1.  Conserved water molecules contribute to the extensive network of interactions at the active site of protein kinase A.

Authors:  S Shaltiel; S Cox; S S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

2.  The interplay of electrostatic fields and binding interactions determining catalytic-site reactivity in actinidin. A possible origin of differences in the behaviour of actinidin and papain.

Authors:  D Kowlessur; M O'Driscoll; C M Topham; W Templeton; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1989-04-15       Impact factor: 3.857

3.  Buried waters and internal cavities in monomeric proteins.

Authors:  M A Williams; J M Goodfellow; J M Thornton
Journal:  Protein Sci       Date:  1994-08       Impact factor: 6.725

Review 4.  Hydrogen bonded chain mechanisms for proton conduction and proton pumping.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

5.  Solvent effects and polar interactions in the structural stability and dynamics of globular proteins.

Authors:  J L Finney; B J Gellatly; I C Golton; J Goodfellow
Journal:  Biophys J       Date:  1980-10       Impact factor: 4.033

6.  Hydration in drug design. 3. Conserved water molecules at the ligand-binding sites of homologous proteins.

Authors:  C S Poornima; P M Dean
Journal:  J Comput Aided Mol Des       Date:  1995-12       Impact factor: 3.686

7.  Water structure in vitamin B12 coenzyme crystals. I. Analysis of the neutron and x-ray solvent densities.

Authors:  H Savage
Journal:  Biophys J       Date:  1986-11       Impact factor: 4.033

8.  Hydration in drug design. 1. Multiple hydrogen-bonding features of water molecules in mediating protein-ligand interactions.

Authors:  C S Poornima; P M Dean
Journal:  J Comput Aided Mol Des       Date:  1995-12       Impact factor: 3.686

Review 9.  Desiccation tolerance of prokaryotes.

Authors:  M Potts
Journal:  Microbiol Rev       Date:  1994-12

10.  Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point.

Authors:  Valentin A Ilyin; Alexej Abyzov; Chesley M Leslin
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

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