Literature DB >> 17867735

Dynamical effects in line shapes for coupled chromophores: time-averaging approximation.

B M Auer1, J L Skinner.   

Abstract

For an isolated resonance of an isolated chromophore in a condensed phase, the absorption line shape is often more sharply peaked than the distribution of transition frequencies as a result of motional narrowing. The latter arises from the time-dependent fluctuations of the transition frequencies. It is well known that one can incorporate these dynamical effects into line shape calculations within a semiclassical approach. For a system of coupled chromophores, both the transition frequencies and the interchromophore couplings fluctuate in time. In principle one can again solve this more complicated problem with a related semiclassical approach, but in practice, for large numbers of chromophores, the computational demands are prohibitive. This has led to the development of a number of approximate theoretical approaches to this problem. In this paper we develop another such approach, using a time-averaging approximation. The idea is that, for a single chromophore, a motionally narrowed line shape can be thought of as a distribution of time-averaged frequencies. This idea is developed and tested on both stochastic and more realistic models of isolated chromophores, and also on realistic models of coupled chromophores, and it is found that in all cases this approximation is quite satisfactory, without undue computational demands. This approach should find application for the vibrational spectroscopy of neat liquids, and also for proteins and other complicated multichromophore systems.

Year:  2007        PMID: 17867735     DOI: 10.1063/1.2766943

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  13 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Coherent infrared multidimensional spectra of the OH stretching band in liquid water simulated by direct nonlinear exciton propagation.

Authors:  Cyril Falvo; Benoit Palmieri; Shaul Mukamel
Journal:  J Chem Phys       Date:  2009-05-14       Impact factor: 3.488

3.  Nonlinear response of vibrational excitons: simulating the two-dimensional infrared spectrum of liquid water.

Authors:  A Paarmann; T Hayashi; S Mukamel; R J D Miller
Journal:  J Chem Phys       Date:  2009-05-28       Impact factor: 3.488

4.  Vibrational spectroscopy of water in hydrated lipid multi-bilayers. I. Infrared spectra and ultrafast pump-probe observables.

Authors:  S M Gruenbaum; J L Skinner
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

5.  Refining Disordered Peptide Ensembles with Computational Amide I Spectroscopy: Application to Elastin-Like Peptides.

Authors:  Mike Reppert; Anish R Roy; Jeremy O B Tempkin; Aaron R Dinner; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2016-10-27       Impact factor: 2.991

6.  Sum frequency generation, calculation of absolute intensities, comparison with experiments, and two-field relaxation-based derivation.

Authors:  Kai Niu; Rudolph A Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-29       Impact factor: 11.205

7.  Development and validation of transferable amide I vibrational frequency maps for peptides.

Authors:  L Wang; C T Middleton; M T Zanni; J L Skinner
Journal:  J Phys Chem B       Date:  2011-03-15       Impact factor: 2.991

8.  Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide.

Authors:  Neelanjana Sengupta; Hiroaki Maekawa; Wei Zhuang; Claudio Toniolo; Shaul Mukamel; Douglas J Tobias; Nien-Hui Ge
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

9.  Thermally induced protein unfolding probed by isotope-edited IR spectroscopy.

Authors:  Lu Wang; James L Skinner
Journal:  J Phys Chem B       Date:  2012-08-01       Impact factor: 2.991

10.  Vibrational exciton delocalization precludes the use of infrared intensities as proxies for surfactant accumulation on aqueous surfaces.

Authors:  Kimberly A Carter-Fenk; Kevin Carter-Fenk; Michelle E Fiamingo; Heather C Allen; John M Herbert
Journal:  Chem Sci       Date:  2021-05-18       Impact factor: 9.825

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