Literature DB >> 17852182

A comparison of non-standard solvers for ODEs describing cellular reactions in the heart.

Mary C Maclachlan1, Joakim Sundnes, Raymond J Spiteri.   

Abstract

Mathematical models for the electrical activity in cardiac cells are normally formulated as systems of ordinary differential equations (ODEs). The equations are nonlinear and describe processes occurring on a wide range of time scales. Under normal accuracy requirements, this makes the systems stiff and therefore challenging to solve numerically. As standard implicit solvers are difficult to implement, explicit solvers such as the forward Euler method are commonly used, despite their poor efficiency. Non-standard formulations of the forward Euler method, derived from the analytical solution of linear ODEs, can give significantly improved performance while maintaining simplicity of implementation. In this paper we study the performance of three non-standard methods on two different cell models with comparable complexity but very different stiffness characteristics.

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Year:  2007        PMID: 17852182     DOI: 10.1080/10255840701259301

Source DB:  PubMed          Journal:  Comput Methods Biomech Biomed Engin        ISSN: 1025-5842            Impact factor:   1.763


  8 in total

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Authors:  Natalia Trayanova; Jason Constantino; Takashi Ashihara; Gernot Plank
Journal:  IEEE Rev Biomed Eng       Date:  2011

2.  Improved discretisation and linearisation of active tension in strongly coupled cardiac electro-mechanics simulations.

Authors:  J Sundnes; S Wall; H Osnes; T Thorvaldsen; A D McCulloch
Journal:  Comput Methods Biomech Biomed Engin       Date:  2012-07-16       Impact factor: 1.763

3.  Near-real-time simulations of biolelectric activity in small mammalian hearts using graphical processing units.

Authors:  Edward J Vigmond; Patrick M Boyle; L Leon; Gernot Plank
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

Review 4.  Towards predictive modelling of the electrophysiology of the heart.

Authors:  Edward Vigmond; Fijoy Vadakkumpadan; Viatcheslav Gurev; Hermenegild Arevalo; Makarand Deo; Gernot Plank; Natalia Trayanova
Journal:  Exp Physiol       Date:  2009-03-06       Impact factor: 2.969

Review 5.  From mitochondrial ion channels to arrhythmias in the heart: computational techniques to bridge the spatio-temporal scales.

Authors:  Gernot Plank; Lufang Zhou; Joseph L Greenstein; Sonia Cortassa; Raimond L Winslow; Brian O'Rourke; Natalia A Trayanova
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2008-09-28       Impact factor: 4.226

6.  Computational modelling of electrocardiograms: repolarisation and T-wave polarity in the human heart.

Authors:  Daniel E Hurtado; Ellen Kuhl
Journal:  Comput Methods Biomech Biomed Engin       Date:  2012-10-31       Impact factor: 1.763

7.  Generation of histo-anatomically representative models of the individual heart: tools and application.

Authors:  Gernot Plank; Rebecca A B Burton; Patrick Hales; Martin Bishop; Tahir Mansoori; Miguel O Bernabeu; Alan Garny; Anton J Prassl; Christian Bollensdorff; Fleur Mason; Fahd Mahmood; Blanca Rodriguez; Vicente Grau; Jürgen E Schneider; David Gavaghan; Peter Kohl
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-06-13       Impact factor: 4.226

8.  Mathematical and statistical modeling in cancer systems biology.

Authors:  Rachael Hageman Blair; David L Trichler; Daniel P Gaille
Journal:  Front Physiol       Date:  2012-06-28       Impact factor: 4.566

  8 in total

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