Literature DB >> 17850136

Optimizing experimental parameters in isothermal titration calorimetry: variable volume procedures.

Joel Tellinghuisen1.   

Abstract

In the study of 1:1 binding, M + X right <==> MX, isothermal titration calorimetry is generally thought to be limited to reactions in which the key parameter, c = K[M]0, can be set in the range 1-1000. In fact, the range of applicability can be extended by a factor of 10-100 at the upper end and as much as 10(5) at the lower, with certain provisos. The present work emphasizes the low-c regime, with the key heat parameter, h identical with DeltaH degrees [M]0, low, as well. Successful determination of K and DeltaH degrees in this region requires that the titration be extended to large excesses of titrant X over titrate M, and then the reaction heat is distributed strongly in favor of the early injections. With decreasing c, DeltaH degrees and the stoichiometry parameter n (often called site number) also become highly correlated and individually indeterminate. However, the product DeltaH degrees x n ( identical with Hn) is well-determined, so if n is known from other information, both K and DeltaH degrees can be determined to quite low c. By varying the titrant volume from injection to injection, one can significantly reduce the uncertainties in the estimated K and Hn values, permitting determination of K to better than 10% and Hn within 3% down to c = 10(-4), even for the low h value of 0.1 cal/L. The titrant volume optimization algorithm yields best results for the minimal number of injections - three when n is fitted, two when it is fixed. At low c, the resulting volume distributions depend nearly exponentially on injection number. This observation facilitates the derivation of similar, near-optimal volume distributions for five- and four-injection procedures that offer two statistical degrees of freedom for analysis. The volume optimization results are tested on the Ba2+/18-crown-6 ether complexation reaction at c = 0.1 and h = 0.16 cal/L, illustrating some practical complications but confirming the utility of the variable-volume protocol.

Entities:  

Year:  2007        PMID: 17850136     DOI: 10.1021/jp074515p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

Review 1.  Thermodynamics of protein-ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data.

Authors:  Stefan G Krimmer; Gerhard Klebe
Journal:  J Comput Aided Mol Des       Date:  2015-09-16       Impact factor: 3.686

2.  Van't Hoff global analyses of variable temperature isothermal titration calorimetry data.

Authors:  Lee A Freiburger; Karine Auclair; Anthony K Mittermaier
Journal:  Thermochim Acta       Date:  2012-01-10       Impact factor: 3.115

Review 3.  Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design.

Authors:  John D Chodera; David L Mobley
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

4.  Obtaining precise and accurate results by ITC.

Authors:  Lee D Hansen; Colette Quinn
Journal:  Eur Biophys J       Date:  2019-09-25       Impact factor: 1.733

5.  Isothermal titration calorimetry in the single-injection mode with imperfect mixing.

Authors:  Philippe Dumas
Journal:  Eur Biophys J       Date:  2022-01-08       Impact factor: 1.733

6.  Discrimination between closely related cellular metabolites by the SAM-I riboswitch.

Authors:  Rebecca K Montange; Estefanía Mondragón; Daria van Tyne; Andrew D Garst; Pablo Ceres; Robert T Batey
Journal:  J Mol Biol       Date:  2009-12-16       Impact factor: 5.469

7.  A structural basis for the recognition of 2'-deoxyguanosine by the purine riboswitch.

Authors:  Andrea L Edwards; Robert T Batey
Journal:  J Mol Biol       Date:  2008-11-05       Impact factor: 5.469

8.  Polymer Brush-Grafted Nanoparticles Preferentially Interact with Opsonins and Albumin.

Authors:  Nikolaus Simon Leitner; Martina Schroffenegger; Erik Reimhult
Journal:  ACS Appl Bio Mater       Date:  2020-12-29

9.  Stealth Nanoparticles Grafted with Dense Polymer Brushes Display Adsorption of Serum Protein Investigated by Isothermal Titration Calorimetry.

Authors:  Noga Gal; Martina Schroffenegger; Erik Reimhult
Journal:  J Phys Chem B       Date:  2018-05-18       Impact factor: 2.991

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.