Literature DB >> 17827217

Protein shape and crowding drive domain formation and curvature in biological membranes.

Raoul N Frese1, Josep C Pàmies, John D Olsen, Svetlana Bahatyrova, Chantal D van der Weij-de Wit, Thijs J Aartsma, Cees Otto, C Neil Hunter, Daan Frenkel, Rienk van Grondelle.   

Abstract

Folding, curvature, and domain formation are characteristics of many biological membranes. Yet the mechanisms that drive both curvature and the formation of specialized domains enriched in particular protein complexes are unknown. For this reason, studies in membranes whose shape and organization are known under physiological conditions are of great value. We therefore conducted atomic force microscopy and polarized spectroscopy experiments on membranes of the photosynthetic bacterium Rhodobacter sphaeroides. These membranes are densely populated with peripheral light harvesting (LH2) complexes, physically and functionally connected to dimeric reaction center-light harvesting (RC-LH1-PufX) complexes. Here, we show that even when converting the dimeric RC-LH1-PufX complex into RC-LH1 monomers by deleting the gene encoding PufX, both the appearance of protein domains and the associated membrane curvature are retained. This suggests that a general mechanism may govern membrane organization and shape. Monte Carlo simulations of a membrane model accounting for crowding and protein geometry alone confirm that these features are sufficient to induce domain formation and membrane curvature. Our results suggest that coexisting ordered and fluid domains of like proteins can arise solely from asymmetries in protein size and shape, without the need to invoke specific interactions. Functionally, coexisting domains of different fluidity are of enormous importance to allow for diffusive processes to occur in crowded conditions.

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Year:  2007        PMID: 17827217      PMCID: PMC2157227          DOI: 10.1529/biophysj.107.116913

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Molecular evidence for the early evolution of photosynthesis.

Authors:  J Xiong; W M Fischer; K Inoue; M Nakahara; C E Bauer
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

2.  Crystal structure of the RC-LH1 core complex from Rhodopseudomonas palustris.

Authors:  Aleksander W Roszak; Tina D Howard; June Southall; Alastair T Gardiner; Christopher J Law; Neil W Isaacs; Richard J Cogdell
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

3.  Projection structure of the photosynthetic reaction centre-antenna complex of Rhodospirillum rubrum at 8.5 A resolution.

Authors:  Stuart J Jamieson; Peiyi Wang; Pu Qian; John Y Kirkland; Matthew J Conroy; C Neil Hunter; Per A Bullough
Journal:  EMBO J       Date:  2002-08-01       Impact factor: 11.598

4.  Flexibility and size heterogeneity of the LH1 light harvesting complex revealed by atomic force microscopy: functional significance for bacterial photosynthesis.

Authors:  Svetlana Bahatyrova; Raoul N Frese; Kees O van der Werf; Cees Otto; C Neil Hunter; John D Olsen
Journal:  J Biol Chem       Date:  2004-03-01       Impact factor: 5.157

5.  Phase separation of asymmetric binary hard-sphere fluids.

Authors: 
Journal:  Phys Rev Lett       Date:  1991-04-29       Impact factor: 9.161

6.  Chromatic adaptation of photosynthetic membranes.

Authors:  Simon Scheuring; James N Sturgis
Journal:  Science       Date:  2005-07-15       Impact factor: 47.728

7.  The purple bacterial photosynthetic unit.

Authors:  R J Cogdell; P K Fyfe; S J Barrett; S M Prince; A A Freer; N W Isaacs; P McGlynn; C N Hunter
Journal:  Photosynth Res       Date:  1996-05       Impact factor: 3.573

8.  The effect of different levels of the B800-850 light-harvesting complex on intracytoplasmic membrane development in Rhodobacter sphaeroides

Authors: 
Journal:  Arch Microbiol       Date:  1996-04       Impact factor: 2.552

9.  The crystallographic structure of the B800-820 LH3 light-harvesting complex from the purple bacteria Rhodopseudomonas acidophila strain 7050.

Authors:  K McLuskey; S M Prince; R J Cogdell; N W Isaacs
Journal:  Biochemistry       Date:  2001-07-31       Impact factor: 3.162

10.  The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum.

Authors:  J Koepke; X Hu; C Muenke; K Schulten; H Michel
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

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  27 in total

1.  Photosynthetic vesicle architecture and constraints on efficient energy harvesting.

Authors:  Melih Sener; Johan Strümpfer; John A Timney; Arvi Freiberg; C Neil Hunter; Klaus Schulten
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

2.  Atomic force microscopy of the bacterial photosynthetic apparatus: plain pictures of an elaborate machinery.

Authors:  Simon Scheuring; James N Sturgis
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

3.  Lateral organization of biological membranes: role of long-range interactions.

Authors:  Jean-Pierre Duneau; James N Sturgis
Journal:  Eur Biophys J       Date:  2013-10-26       Impact factor: 1.733

4.  Protein-induced membrane curvature investigated through molecular dynamics flexible fitting.

Authors:  Jen Hsin; James Gumbart; Leonardo G Trabuco; Elizabeth Villa; Pu Qian; C Neil Hunter; Klaus Schulten
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

5.  Atomic force microscopy reveals multiple patterns of antenna organization in purple bacteria: implications for energy transduction mechanisms and membrane modeling.

Authors:  James N Sturgis; Robert A Niederman
Journal:  Photosynth Res       Date:  2007-10-09       Impact factor: 3.573

6.  Jumping mode atomic force microscopy on grana membranes from spinach.

Authors:  Kinga Sznee; Jan P Dekker; Remus T Dame; Henny van Roon; Gijs J L Wuite; Raoul N Frese
Journal:  J Biol Chem       Date:  2011-09-12       Impact factor: 5.157

Review 7.  Förster energy transfer theory as reflected in the structures of photosynthetic light-harvesting systems.

Authors:  Melih Şener; Johan Strümpfer; Jen Hsin; Danielle Chandler; Simon Scheuring; C Neil Hunter; Klaus Schulten
Journal:  Chemphyschem       Date:  2011-02-25       Impact factor: 3.102

8.  Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7.

Authors:  Binod Nepal; Aliasghar Sepehri; Themis Lazaridis
Journal:  Protein Sci       Date:  2020-03-18       Impact factor: 6.725

9.  Minimal mesoscale model for protein-mediated vesiculation in clathrin-dependent endocytosis.

Authors:  Neeraj J Agrawal; Jonathan Nukpezah; Ravi Radhakrishnan
Journal:  PLoS Comput Biol       Date:  2010-09-09       Impact factor: 4.475

10.  Membrane curvature induced by aggregates of LH2s and monomeric LH1s.

Authors:  Danielle E Chandler; James Gumbart; John D Stack; Christophe Chipot; Klaus Schulten
Journal:  Biophys J       Date:  2009-12-02       Impact factor: 4.033

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