| Literature DB >> 17825092 |
Masami Nemoto1, Rimei Nishimura, Takashi Sasaki, Yoshito Hiki, Yumi Miyashita, Makiko Nishioka, Kei Fujimoto, Toru Sakuma, Toya Ohashi, Kunihiko Fukuda, Yoshikatsu Eto, Naoko Tajima.
Abstract
BACKGROUND: Although oxidative stress by accumulation of reactive oxygen species (ROS) in diabetes has become evident, it remains unclear what genes, involved in redox balance, would determine susceptibility for development of atherosclerosis in diabetes. This study evaluated the effect of genetic polymorphism of enzymes producing or responsible for reducing ROS on coronary artery calcification in type 2 diabetes (T2D).Entities:
Mesh:
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Year: 2007 PMID: 17825092 PMCID: PMC2041944 DOI: 10.1186/1475-2840-6-23
Source DB: PubMed Journal: Cardiovasc Diabetol ISSN: 1475-2840 Impact factor: 9.951
List of sequences of PCR primers used
| a. | ||||
| Gene | Restriction Enzyme | Direction | Primers | |
| Nsp I | Sense | 5' GCTGGCTGGTGACATCAGTG3' | ||
| Antisense | 5' TCAGGTTCCATCTTTCTGCCAG3' | |||
| Mva I | Sense | 5' CGCCCAATACC-GCCAACAC3' | ||
| Antisense | 5' CCACCAGGAGTCCCATCACC3' | |||
| Bst UI | Sense | 5' GCCAATTCAAGCCCAGTC3' | ||
| Antisense | 5'GATATGTTTGCAGACAGTGTATCAGTGAAGGAATCGCTTTCCG3' | |||
| Hpa II | Sense | 5' GTGAGGTCCATGCCAGCCTG3' | ||
| Antisense | 5' CACCTGTGAAGCCCTTGGTCAG3' | |||
| b. | ||||
| Gene | Restriction Enzyme | Direction | Primers | |
| Hae III | Sense | 5' TTATGACCGACCCCAAGCTCA3' | ||
| Antisense | 5' ACAGCAGCACTGCAACTGCC3' | |||
| Hinf I | Sense | 5'AATCAGAAGGCAGTCCTCCC3' | ||
| Antisense | 5'TCGGGGAGCACAGAGTGTAC3' | |||
| BsaW I | Sense | 5' GCTGTGCTTTCTCGTCTTCAG3' | ||
| Antisense | 5'TGGTACTTCTCCTCGGTGACG 3' | |||
| Hha I | Sense | 5'CTATCCAGAAAACACGGTGGGCC3' | ||
| Antisense | 5'ATTGCCCAAGTCTCCAACATGC 3' | |||
| Rsa I | Sense | 5'ACACTGAGGTAAGTGGGGGTGGCTCCTGT3' | ||
| Antisense | 5' TGCTTGTGGGTAAACCAAGGCCGGTG3' | |||
Oligonucleotides used as PCR primers for the detection of each SNP. a) genes associated with the onset of type 2 diabetes and/or insulin resistance. b) genes related to the ROS-scavenging system. Enzymes represent restriction enzymes for detection of each RFLP of PCR product.
Clinical characteristics of patients with type 2 diabetes.
| Age (years) | 60 ± 8 (range, 42 – 81) |
| Duration of diabetes (years) | 11.6 ± 8.9 (range, 0 – 42) |
| LDL-cholesterol (mmol/l) | 3.37 ± 0.81 |
| HDL-cholesterol (mmol/l) | 1.31 ± 0.55 |
| Triglyceride (g/l) | 1.69 ± 1.15 |
| Blood pressure (systolic) (mmHg) | 137 ± 18 |
| Blood pressure (diastolic) (mmHg) | 80 ± 11 |
| HbA1c (%) | 8.2 ± 1.8 |
| Smoking | 40/91 (44.0%) |
Data are mean ± standard deviation (SD) or frequencies (%).
Results of association analyses between each genotype of candidate genes and coronary artery calcium score (CACS).
| a. | |||||
| Gene (SNPs) | Genotype | No. of patients | CACS (HU) | ||
| G/G | 84 (92.3%) | 362 ± 735 | 0.456 | ||
| G/A | 7 (7.7%) | 153 ± 150 | |||
| Try/Try | 55 (61.8%) | 377 ± 776 | 0.621 | ||
| Arg/Arg & Arg/Try | 34 (38.2%) | 301 ± 605 | |||
| Pro/Pro | 85 (93.4%) | 335 ± 686 | 0.580 | ||
| Ala/Pro & Ala/Ala | 6 (6.6%) | 502 ± 1049 | |||
| Gly/Gly | 48 (52.7%) | 346 ± 797 | 0.991 | ||
| Ser/Ser & Ser/Gly | 43 (47.3%) | 346 ± 605 | |||
| b. | |||||
| Gene (SNPs) | Genotype | No. of patients | CACS (HU) | ||
| Pro/Pro | 71 (78.0%) | 245 ± 399 | 0.006 * | ||
| Pro/Leu | 20 (22.0%) | 744 ± 1291 | |||
| T/T | 25 (27.5%) | 319 ± 573 | 0.821 | ||
| A/T & A/A | 66 (72.5%) | 357 ± 758 | |||
| Val/Val | 49 (55.7%) | 293 ± 669 | 0.440 | ||
| Val/Ala & Ala/Ala | 39 (44.3%) | 408 ± 756 | |||
| C/C | 34 (37.4%) | 370 ± 788 | 0.805 | ||
| C/A & A/A | 57 (62.6%) | 332 ± 664 | |||
| C/C | 79 (86.8%) | 311 ± 724 | 0.224 | ||
| T/T & T/C | 12 (13.2%) | 579 ± 567 | |||
Difference of CACS according to each genotype of candidates genes. a) genes that are associated with onset of type 2 diabetes. b) genes that are related to the redox balance. Student t-test; * : p < 0.05.
Clinical characteristics of patients with Pro/Pro and Pro/Leu at GPx-1 gene.
| Pro/Pro | Pro/Leu | ||
| Age(years) | 59.4 ± 8.3 | 62.7 ± 8.9 | 0.136 |
| Duration of diabetes(years) | 11.3 ± 8.5 | 12.5 ± 8.8 | 0.609 |
| BMI(kg/m2) | 24.7 ± 3.9 | 24.2 ± 3.1 | 0.596 |
| LDL-cholesterol(mmol/l) | 3.39 ± 0.80 | 3.39 ± 0.83 | 0.978 |
| HDL-cholesterol(mmol/l) | 1.32 ± 0.65 | 1.31 ± 0.55 | 0.679 |
| Triglyceride(g/l) | 1.71 ± 1.16 | 1.63 ± 1.16 | 0.809 |
| Blood pressure (systolic) (mmHg) | 138 ± 19 | 132 ± 13 | 0.208 |
| Blood pressure (diastolic) (mmHg) | 81 ± 12 | 76 ± 8 | 0.119 |
| HbA1c (%) | 8.5 ± 1.8 | 7.8 ± 1.6 | 0.158 |
| Smoking (%) | 43.1 | 63.7 | 0.272 |
Data are means ± standard deviation (SD) or frequencies (%).
Association between Pro197Leu of the GPx-1 gene and coronary artery calcium score (CACS)
| a) Genotype distribution of | |||
| CACS | Pro/Pro | Pro/Leu | |
| 0–999 | 65 | 15(18.8%) | 0.045 |
| 1000 ≤ | 6 | 5(45.5%) | |
| b) Allele distribution of | |||
| CACS | Pro | Leu | |
| 0–999 | 145 | 15(9.4%) | 0.06 |
| 1000 ≤ | 17 | 5 (22.7%) | |
Results of the case-control analysis for the allele and genotype frequencies of the GPx-1 gene. Genotype (a) and allele (b) frequencies were analyzed in the case-control study based on the HWE (De Finetti program). a) Analysis for the GPx-1 gene showed that the genotype frequency of Pro/Leu in those with CACS (≥ 1000) was significantly higher than that in those with CACS (0–999) and this association was confirmed by testing for deviation from Hardy-Weinberg's equilibrium (OR = 3.61; CI = 0.97–13.42; p = 0.045). b) The allele frequency of Leu in patients with CACS (≥ 1000) was also higher than that in those with CACS (0–999) and a trend for genetic association was appeared when testing for deviation from HWE (OR = 2.84; CI = 0.92–8.8; p = 0.06).