Literature DB >> 17786517

CAVASS: a computer-assisted visualization and analysis software system.

George Grevera1, Jayaram Udupa, Dewey Odhner, Ying Zhuge, Andre Souza, Tad Iwanaga, Shipra Mishra.   

Abstract

The Medical Image Processing Group at the University of Pennsylvania has been developing (and distributing with source code) medical image analysis and visualization software systems for a long period of time. Our most recent system, 3DVIEWNIX, was first released in 1993. Since that time, a number of significant advancements have taken place with regard to computer platforms and operating systems, networking capability, the rise of parallel processing standards, and the development of open-source toolkits. The development of CAVASS by our group is the next generation of 3DVIEWNIX. CAVASS will be freely available and open source, and it is integrated with toolkits such as Insight Toolkit and Visualization Toolkit. CAVASS runs on Windows, Unix, Linux, and Mac but shares a single code base. Rather than requiring expensive multiprocessor systems, it seamlessly provides for parallel processing via inexpensive clusters of work stations for more time-consuming algorithms. Most importantly, CAVASS is directed at the visualization, processing, and analysis of 3-dimensional and higher-dimensional medical imagery, so support for digital imaging and communication in medicine data and the efficient implementation of algorithms is given paramount importance.

Entities:  

Mesh:

Year:  2007        PMID: 17786517      PMCID: PMC2039829          DOI: 10.1007/s10278-007-9060-5

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  22 in total

1.  A characterization of the geometric architecture of the peritalar joint complex via MRI: an aid to the classification of foot type.

Authors:  E Stindel; J K Udupa; B E Hirsch; D Odhner
Journal:  IEEE Trans Med Imaging       Date:  1999-09       Impact factor: 10.048

2.  An ultra-fast user-steered image segmentation paradigm: live wire on the fly.

Authors:  A X Falcão; J K Udupa; F K Miyazawa
Journal:  IEEE Trans Med Imaging       Date:  2000-01       Impact factor: 10.048

3.  3D MR image analysis of the morphology of the rear foot: application to classification of bones.

Authors:  E Stindel; J K Udupa; B E Hirsch; D Odhner; C Couture
Journal:  Comput Med Imaging Graph       Date:  1999 Mar-Apr       Impact factor: 4.790

4.  A PC-based 3D imaging system: algorithms, software, and hardware considerations.

Authors:  S P Raya; J K Udupa; W A Barrett
Journal:  Comput Med Imaging Graph       Date:  1990 Sep-Oct       Impact factor: 4.790

5.  Volume rendering in the presence of partial volume effects.

Authors:  Andre Souza; Jayaram K Udupa; Punam K Saha
Journal:  IEEE Trans Med Imaging       Date:  2005-02       Impact factor: 10.048

6.  Multidimensional data format specification: a generalization of the American College of Radiology-National Electric Manufacturers Association standards.

Authors:  J K Udupa; H M Hung; D Odhner; R Goncalves
Journal:  J Digit Imaging       Date:  1992-02       Impact factor: 4.056

7.  New methods of MR image intensity standardization via generalized scale.

Authors:  Anant Madabhushi; Jayaram K Udupa
Journal:  Med Phys       Date:  2006-09       Impact factor: 4.071

8.  Nonlinear anisotropic filtering of MRI data.

Authors:  G Gerig; O Kubler; R Kikinis; F A Jolesz
Journal:  IEEE Trans Med Imaging       Date:  1992       Impact factor: 10.048

9.  Analysis of in vivo 3-D internal kinematics of the joints of the foot.

Authors:  J K Udupa; B E Hirsch; H J Hillstrom; G R Bauer; J B Kneeland
Journal:  IEEE Trans Biomed Eng       Date:  1998-11       Impact factor: 4.538

10.  Demonstration of a software package for the reconstruction of the dynamically changing structure of the human heart from cone beam x-ray projections.

Authors:  M D Altschuler; Y Censor; P P Eggermont; G T Herman; Y H Kuo; R M Lewitt; M McKay; H K Tuy; J K Udupa; M M Yau
Journal:  J Med Syst       Date:  1980       Impact factor: 4.460

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  19 in total

1.  Parallel fuzzy connected image segmentation on GPU.

Authors:  Ying Zhuge; Yong Cao; Jayaram K Udupa; Robert W Miller
Journal:  Med Phys       Date:  2011-07       Impact factor: 4.071

2.  Understanding Respiratory Restrictions as a Function of the Scoliotic Spinal Curve in Thoracic Insufficiency Syndrome: A 4D Dynamic MR Imaging Study.

Authors:  Jayaram K Udupa; Yubing Tong; Anthony Capraro; Joseph M McDonough; Oscar H Mayer; Suzanne Ho; Paul Wileyto; Drew A Torigian; Robert M Campbell
Journal:  J Pediatr Orthop       Date:  2018-09-20       Impact factor: 2.324

3.  Image Quality and Segmentation.

Authors:  Gargi V Pednekar; Jayaram K Udupa; David J McLaughlin; Xingyu Wu; Yubing Tong; Charles B Simone; Joseph Camaratta; Drew A Torigian
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03-13

4.  GPU-based relative fuzzy connectedness image segmentation.

Authors:  Ying Zhuge; Krzysztof C Ciesielski; Jayaram K Udupa; Robert W Miller
Journal:  Med Phys       Date:  2013-01       Impact factor: 4.071

5.  Minimally interactive segmentation of 4D dynamic upper airway MR images via fuzzy connectedness.

Authors:  Yubing Tong; Jayaram K Udupa; Dewey Odhner; Caiyun Wu; Sanghun Sin; Mark E Wagshul; Raanan Arens
Journal:  Med Phys       Date:  2016-05       Impact factor: 4.071

6.  Automatic thoracic body region localization.

Authors:  PeiRui Bai; Jayaram K Udupa; YuBing Tong; ShiPeng Xie; Drew A Torigian
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-03-03

7.  A Study of the Feasibility of FDG-PET/CT to Systematically Detect and Quantify Differential Metabolic Effects of Chronic Tobacco Use in Organs of the Whole Body-A Prospective Pilot Study.

Authors:  Drew A Torigian; Judith Green-McKenzie; Xianling Liu; Frances S Shofer; Thomas Werner; Catherine E Smith; Andrew A Strasser; Mateen C Moghbel; Ami H Parekh; Grace Choi; Marcus D Goncalves; Natalie Spaccarelli; Saied Gholami; Prithvi S Kumar; Yubing Tong; Jayaram K Udupa; Clementina Mesaros; Abass Alavi
Journal:  Acad Radiol       Date:  2016-10-18       Impact factor: 3.173

8.  Retrospective 4D MR image construction from free-breathing slice Acquisitions: A novel graph-based approach.

Authors:  Yubing Tong; Jayaram K Udupa; Krzysztof C Ciesielski; Caiyun Wu; Joseph M McDonough; David A Mong; Robert M Campbell
Journal:  Med Image Anal       Date:  2016-08-13       Impact factor: 8.545

9.  AAR-RT - A system for auto-contouring organs at risk on CT images for radiation therapy planning: Principles, design, and large-scale evaluation on head-and-neck and thoracic cancer cases.

Authors:  Xingyu Wu; Jayaram K Udupa; Yubing Tong; Dewey Odhner; Gargi V Pednekar; Charles B Simone; David McLaughlin; Chavanon Apinorasethkul; Ontida Apinorasethkul; John Lukens; Dimitris Mihailidis; Geraldine Shammo; Paul James; Akhil Tiwari; Lisa Wojtowicz; Joseph Camaratta; Drew A Torigian
Journal:  Med Image Anal       Date:  2019-01-29       Impact factor: 8.545

10.  CAVASS: a computer-assisted visualization and analysis software system.

Authors:  George Grevera; Jayaram Udupa; Dewey Odhner; Ying Zhuge; Andre Souza; Tad Iwanaga; Shipra Mishra
Journal:  J Digit Imaging       Date:  2007-09-06       Impact factor: 4.056

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