Literature DB >> 17766877

Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov., isolated from soil.

Jung-Hoon Yoon1, So-Jung Kang1, Sooyeon Park1, Tae-Kwang Oh1.   

Abstract

Two Gram-negative, non-motile, pleomorphic bacterial strains, DS-40(T) and DS-45(T), were isolated from a soil sample collected from Dokdo, Korea, and their exact taxonomic positions were investigated by using a polyphasic approach. Strains DS-40(T) and DS-45(T) grew optimally at 25 degrees C and pH 6.5-7.5 in the presence of 0-1.0 % (w/v) NaCl. They contained MK-7 as the predominant menaquinone and possessed iso-C(15 : 0), iso-C(17 : 0) 3-OH and summed feature 3 (C(16 : 1)omega7c and/or iso-C(15 : 0) 2-OH) as the major fatty acids. The DNA G+C contents of strains DS-40(T) and DS-45(T) were 36.0 and 36.8 mol%, respectively. Strains DS-40(T) and DS-45(T) shared a 16S rRNA gene sequence similarity of 96.7 % and demonstrated a mean DNA-DNA relatedness level of 12 %. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strains DS-40(T) and DS-45(T) were most closely phylogenetically affiliated with the genus Pedobacter of the family Sphingobacteriaceae. Strains DS-40(T) and DS-45(T) exhibited 16S rRNA gene sequence similarity values of 91.4-93.7 and 89.9-91.6 % with respect to the type strains of Pedobacter and Sphingobacterium species, respectively. Phenotypic and chemotaxonomic properties, together with the phylogenetic data, support the assignment of strains DS-40(T) and DS-45(T) as two distinct species within the genus Pedobacter. On the basis of phenotypic, phylogenetic and genetic data, strains DS-40(T) and DS-45(T) represent two novel species of the genus Pedobacter, for which the names Pedobacter lentus sp. nov. and Pedobacter terricola sp. nov. are proposed, respectively. The respective type strains are DS-40(T) (=KCTC 12875(T)=JCM 14593(T)) and DS-45(T) (=KCTC 12876(T)=JCM 14594(T)).

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Year:  2007        PMID: 17766877     DOI: 10.1099/ijs.0.65146-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  5 in total

1.  Pedobacter soyangensis sp. nov., isolated from Lake Soyang in Korea.

Authors:  Yochan Joung; Heeyoung Kang; Haneul Kim; Beom-Il Lee; O-Seob Kwon; Kiseong Joh
Journal:  J Microbiol       Date:  2014-01-04       Impact factor: 3.422

2.  Pedobacter yonginense sp. nov., isolated from a mesotrophic artificial Lake in Korea.

Authors:  Yochan Joung; Hanuel Kim; Kiseong Joh
Journal:  J Microbiol       Date:  2010-08-20       Impact factor: 3.422

3.  Pedobacter hainanensis sp. nov., isolated from seaside soil.

Authors:  Yan-yu Meng; Yun-bin Fu; Meng-yu Wang; Yong Zhao; Qi-shun Liu; Yu-guang Du
Journal:  Curr Microbiol       Date:  2013-01-13       Impact factor: 2.188

4.  Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).

Authors:  Konstantinos Liolios; Johannes Sikorski; Meagan Lu; Matt Nolan; Alla Lapidus; Susan Lucas; Nancy Hammon; Shweta Deshpande; Jan-Fang Cheng; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Marcel Huntemann; Natalia Ivanova; Ioanna Pagani; Konstantinos Mavromatis; Galina Ovchinikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Evelyne-Marie Brambilla; Oleg Kotsyurbenko; Manfred Rohde; Brian J Tindall; Birte Abt; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2011-09-23

5.  Exploration of Social Spreading Reveals That This Behavior Is Prevalent among Pedobacter and Pseudomonas fluorescens Isolates and That There Are Variations in the Induction of the Phenotype.

Authors:  Lucy M McCully; Jasmine Graslie; Alana R McGraw; Adam S Bitzer; Auður M Sigurbjörnsdóttir; Oddur Vilhelmsson; Mark W Silby
Journal:  Appl Environ Microbiol       Date:  2021-07-21       Impact factor: 4.792

  5 in total

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