Literature DB >> 17765003

Atlas stratification.

Daniel J Blezek1, James V Miller.   

Abstract

The process of constructing an atlas typically involves selecting one individual from a sample on which to base or root the atlas. If the individual selected is far from the population mean, then the resulting atlas is biased towards this individual. This, in turn, may bias any inferences made with the atlas. Unbiased atlas construction addresses this issue by either basing the atlas on the individual which is the median of the sample or by an iterative technique whereby the atlas converges to the unknown population mean. In this paper, we explore the question of whether a single atlas is appropriate for a given sample or whether there is sufficient image based evidence from which we can infer multiple atlases, each constructed from a subset of the data. We refer to this process as atlas stratification. Essentially, we determine whether the sample, and hence the population, is multi-modal and is best represented by an atlas per mode. In this preliminary work, we use the mean shift algorithm to identify the modes of the sample and multidimensional scaling to visualize the clustering process on clinical MRI neurological image datasets.

Mesh:

Year:  2007        PMID: 17765003      PMCID: PMC2042991          DOI: 10.1016/j.media.2007.07.001

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  10 in total

1.  PET-CT image registration in the chest using free-form deformations.

Authors:  David Mattes; David R Haynor; Hubert Vesselle; Thomas K Lewellen; William Eubank
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

2.  Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration.

Authors:  Daniel Rueckert; Alejandro F Frangi; Julia A Schnabel
Journal:  IEEE Trans Med Imaging       Date:  2003-08       Impact factor: 10.048

3.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

4.  Least biased target selection in probabilistic atlas construction.

Authors:  Hyunjin Park; Peyton H Bland; Alfred O Hero; Charles R Meyer
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Unbiased atlas formation via large deformations metric mapping.

Authors:  Peter Lorenzen; Brad Davis; Sarang Joshi
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

6.  A marginalized MAP approach and EM optimization for pair-wise registration.

Authors:  Lilla Zöllei; Mark Jenkinson; Samson Timoner; William Wells
Journal:  Inf Process Med Imaging       Date:  2007

7.  Multi-modal volume registration by maximization of mutual information.

Authors:  W M Wells; P Viola; H Atsumi; S Nakajima; R Kikinis
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

Review 8.  Software tools for analysis and visualization of fMRI data.

Authors:  R W Cox; J S Hyde
Journal:  NMR Biomed       Date:  1997 Jun-Aug       Impact factor: 4.044

9.  Multimodality image registration by maximization of mutual information.

Authors:  F Maes; A Collignon; D Vandermeulen; G Marchal; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

10.  A unified approach for morphometric and functional data analysis in young, old, and demented adults using automated atlas-based head size normalization: reliability and validation against manual measurement of total intracranial volume.

Authors:  Randy L Buckner; Denise Head; Jamie Parker; Anthony F Fotenos; Daniel Marcus; John C Morris; Abraham Z Snyder
Journal:  Neuroimage       Date:  2004-10       Impact factor: 6.556

  10 in total
  26 in total

1.  Locally Weighted Multi-atlas Construction.

Authors:  Junning Li; Yonggang Shi; Ivo D Dinov; Arthur W Toga
Journal:  Multimodal Brain Image Anal (2013)       Date:  2013-01-01

2.  Using Frankenstein's creature paradigm to build a patient specific atlas.

Authors:  Olivier Commowick; Simon K Warfield; Grégoire Malandain
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

3.  On the manifold structure of the space of brain images.

Authors:  Samuel Gerber; Tolga Tasdizen; Sarang Joshi; Ross Whitaker
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

4.  Construction of patient specific atlases from locally most similar anatomical pieces.

Authors:  Liliane Ramus; Olivier Commowick; Grégoire Malandain
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

5.  Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation.

Authors:  Feng Shi; Pew-Thian Yap; Yong Fan; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Neuroimage       Date:  2010-02-17       Impact factor: 6.556

6.  Discovering modes of an image population through mixture modeling.

Authors:  Mert R Sabuncu; Serdar K Balci; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

7.  Feature-based groupwise registration by hierarchical anatomical correspondence detection.

Authors:  Guorong Wu; Qian Wang; Hongjun Jia; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2011-03-09       Impact factor: 5.038

8.  Neonatal atlas construction using sparse representation.

Authors:  Feng Shi; Li Wang; Guorong Wu; Gang Li; John H Gilmore; Weili Lin; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2014-03-17       Impact factor: 5.038

Review 9.  Vision 20/20: perspectives on automated image segmentation for radiotherapy.

Authors:  Gregory Sharp; Karl D Fritscher; Vladimir Pekar; Marta Peroni; Nadya Shusharina; Harini Veeraraghavan; Jinzhong Yang
Journal:  Med Phys       Date:  2014-05       Impact factor: 4.071

10.  The SRI24 multichannel atlas of normal adult human brain structure.

Authors:  Torsten Rohlfing; Natalie M Zahr; Edith V Sullivan; Adolf Pfefferbaum
Journal:  Hum Brain Mapp       Date:  2010-05       Impact factor: 5.038

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