Literature DB >> 17764954

The ribosome in focus: new structures bring new insights.

Andrei Korostelev1, Harry F Noller.   

Abstract

Recent all-atom crystal structures of 70S ribosome functional complexes provide a detailed description of how the ribosome interacts with its mRNA and tRNA substrates. The structures support the view that the fundamental steps of translation are based on RNA-RNA interactions, which in some cases underwent further refinement as a result of having recruited proteins. The structural basis of the discrimination of cognate tRNA, the high affinity for tRNA in the peptidyl-tRNA site, the structure of the peptidyl transferase catalytic center, the specificity of the exit site for deacylated tRNA and other functional properties of the ribosome are now explained, confirmed or visualized for the first time in complexes containing full-length tRNAs and defined mRNAs. Clues to the structural dynamics of translation are suggested by conformational changes that occur in both tRNA and the ribosome upon complex formation.

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Year:  2007        PMID: 17764954     DOI: 10.1016/j.tibs.2007.08.002

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  44 in total

1.  Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae.

Authors:  Akiko Noma; Sanghyun Yi; Takayuki Katoh; Yoshimi Takai; Takeo Suzuki; Tsutomu Suzuki
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

Review 2.  Ribosome evolution: emergence of peptide synthesis machinery.

Authors:  Koji Tamura
Journal:  J Biosci       Date:  2011-12       Impact factor: 1.826

3.  Optimizing ring assembly reveals the strength of weak interactions.

Authors:  Eric J Deeds; John A Bachman; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

4.  Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs.

Authors:  Mridusmita Saikia; Ye Fu; Mariana Pavon-Eternod; Chuan He; Tao Pan
Journal:  RNA       Date:  2010-05-19       Impact factor: 4.942

5.  Intramolecular phenotypic capacitance in a modular RNA molecule.

Authors:  Eric J Hayden; Devin P Bendixsen; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-23       Impact factor: 11.205

Review 6.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

7.  Initiation of ribosome degradation during starvation in Escherichia coli.

Authors:  Michael A Zundel; Georgeta N Basturea; Murray P Deutscher
Journal:  RNA       Date:  2009-03-26       Impact factor: 4.942

8.  Simulating movement of tRNA through the ribosome during hybrid-state formation.

Authors:  Paul C Whitford; Karissa Y Sanbonmatsu
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

9.  Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Authors:  Kaiming Zhang; Sarah C Keane; Zhaoming Su; Rossitza N Irobalieva; Muyuan Chen; Verna Van; Carly A Sciandra; Jan Marchant; Xiao Heng; Michael F Schmid; David A Case; Steven J Ludtke; Michael F Summers; Wah Chiu
Journal:  Structure       Date:  2018-02-02       Impact factor: 5.006

Review 10.  A new view of protein synthesis: mapping the free energy landscape of the ribosome using single-molecule FRET.

Authors:  James B Munro; Andrea Vaiana; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  Biopolymers       Date:  2008-07       Impact factor: 2.505

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