Literature DB >> 17744720

An SCF Solvation Model for the Hydrophobic Effect and Absolute Free Energies of Aqueous Solvation.

C J Cramer, D G Truhlar.   

Abstract

A model for absolute free energies of solvation of organic, small inorganic, and biological molecules in aqueous solution is described. This model has the following features: (i) the solute charge distribution is described by distributed monopoles, and solute screening of dielectric polarization is treated with no restrictions on solute shape; (ii) the energetic effects of cavity formation, dispersion interactions, and solute-induced restructuring of water are included by a semiempirical cavity surface tension; and (iii) both of these effects are included in the solute Hamiltonian operator for self-consistent field (SCF) calculations to allow solvent-induced electronic and geometric distortion of the solute. The model is parameterized for solutes composed of H, C, N, O, F, P, S, Cl, Br, and I against experimental data for 150 neutral solutes and 28 ions, with mean absolute errors of 0.7 and 2.6 kilocalories per mole, respectively.

Entities:  

Year:  1992        PMID: 17744720     DOI: 10.1126/science.256.5054.213

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  33 in total

1.  A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Authors:  Nadya Kobko; Mateusz Marianski; Amparo Asensio; Robert Wieczorek; J J Dannenberg
Journal:  Comput Theor Chem       Date:  2011-11-22       Impact factor: 1.926

2.  Accurate representation of B-DNA double helical structure with implicit solvent and counterions.

Authors:  Lihua Wang; Brian E Hingerty; A R Srinivasan; Wilma K Olson; Suse Broyde
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

Review 3.  Progress in the prediction of pKa values in proteins.

Authors:  Emil Alexov; Ernest L Mehler; Nathan Baker; António M Baptista; Yong Huang; Francesca Milletti; Jens Erik Nielsen; Damien Farrell; Tommy Carstensen; Mats H M Olsson; Jana K Shen; Jim Warwicker; Sarah Williams; J Michael Word
Journal:  Proteins       Date:  2011-10-15

4.  Effects of structural modifications on the intestinal permeability of angiotensin II receptor antagonists and the correlation of in vitro, in situ, and in vivo absorption.

Authors:  M D Ribadeneira; B J Aungst; C J Eyermann; S M Huang
Journal:  Pharm Res       Date:  1996-02       Impact factor: 4.200

Review 5.  Polarizable atomic multipole solutes in a Poisson-Boltzmann continuum.

Authors:  Michael J Schnieders; Nathan A Baker; Pengyu Ren; Jay W Ponder
Journal:  J Chem Phys       Date:  2007-03-28       Impact factor: 3.488

6.  First-principles calculation of pKa for cocaine, nicotine, neurotransmitters, and anilines in aqueous solution.

Authors:  Haiting Lu; Xi Chen; Chang-Guo Zhan
Journal:  J Phys Chem B       Date:  2007-08-11       Impact factor: 2.991

7.  AM1-SM2 and PM3-SM3 parameterized SCF solvation models for free energies in aqueous solution.

Authors:  C J Cramer; D G Truhlar
Journal:  J Comput Aided Mol Des       Date:  1992-12       Impact factor: 3.686

8.  On-the-fly Numerical Surface Integration for Finite-Difference Poisson-Boltzmann Methods.

Authors:  Qin Cai; Xiang Ye; Jun Wang; Ray Luo
Journal:  J Chem Theory Comput       Date:  2011-11-01       Impact factor: 6.006

9.  Specific and non-specific protein association in solution: computation of solvent effects and prediction of first-encounter modes for efficient configurational bias Monte Carlo simulations.

Authors:  Antonio Cardone; Harish Pant; Sergio A Hassan
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

10.  Oil/water transfer is partly driven by molecular shape, not just size.

Authors:  Christopher J Fennell; Charlie Kehoe; Ken A Dill
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

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