Literature DB >> 17742054

COMPUTING: Screen Savers of the World Unite!

M Shirts, V S Pande.   

Abstract

Unused CPU time on desktop computers could be put to good use, if distributed computing succeeds in capturing people's imagination. In their Perspective, Shirts and Pande describe existing distributed computing projects and recent efforts to overcome parallelization problems. This vast underused resource could raise biological and other scientific computation to fundamentally new predictive levels.

Entities:  

Year:  2000        PMID: 17742054     DOI: 10.1126/science.290.5498.1903

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  138 in total

1.  Meeting halfway on the bridge between protein folding theory and experiment.

Authors:  Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-25       Impact factor: 11.205

2.  Thoroughly sampling sequence space: large-scale protein design of structural ensembles.

Authors:  Stefan M Larson; Jeremy L England; John R Desjarlais; Vijay S Pande
Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

3.  Multiplexed-replica exchange molecular dynamics method for protein folding simulation.

Authors:  Young Min Rhee; Vijay S Pande
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations.

Authors:  Eric J Sorin; Young Min Rhee; Bradley J Nakatani; Vijay S Pande
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

5.  Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

Authors:  Christopher D Snow; Linlin Qiu; Deguo Du; Feng Gai; Stephen J Hagen; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-12       Impact factor: 11.205

6.  Simulations of the role of water in the protein-folding mechanism.

Authors:  Young Min Rhee; Eric J Sorin; Guha Jayachandran; Erik Lindahl; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-16       Impact factor: 11.205

7.  Prospects of a computational origin of life endeavor.

Authors:  Barak Shenhav; Doron Lancet
Journal:  Orig Life Evol Biosph       Date:  2004-02       Impact factor: 1.950

8.  Simple few-state models reveal hidden complexity in protein folding.

Authors:  Kyle A Beauchamp; Robert McGibbon; Yu-Shan Lin; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-09       Impact factor: 11.205

9.  Equilibrium fluctuations of a single folded protein reveal a multitude of potential cryptic allosteric sites.

Authors:  Gregory R Bowman; Phillip L Geissler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

10.  Long Timestep Molecular Dynamics on the Graphical Processing Unit.

Authors:  James C Sweet; Ronald J Nowling; Trevor Cickovski; Christopher R Sweet; Vijay S Pande; Jesús A Izaguirre
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

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