Literature DB >> 17728980

Stretching dynamics of semiflexible polymers.

B Obermayer1, O Hallatschek, E Frey, K Kroy.   

Abstract

We analyze the nonequilibrium dynamics of single inextensible semiflexible biopolymers as stretching forces are applied at the ends. Based on different (contradicting) heuristic arguments, various scaling laws have been proposed for the propagation speed of the backbone tension which is induced in response to stretching. Here, we employ a newly developed unified theory to systematically substantiate, restrict, and extend these approaches. Introducing the practically relevant scenario of a chain equilibrated under some prestretching force f (pre) that is suddenly exposed to a different external force f (ext) at the ends, we give a concise physical explanation of the underlying relaxation processes by means of an intuitive blob picture. We discuss the corresponding intermediate asymptotics, derive results for experimentally relevant observables, and support our conclusions by numerical solutions of the coarse-grained equations of motion for the tension.

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Year:  2007        PMID: 17728980     DOI: 10.1140/epje/i2006-10221-y

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  18 in total

1.  Straightening of Thermal Fluctuations in Semiflexible Polymers by Applied Tension.

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Journal:  Phys Rev Lett       Date:  1996-12-30       Impact factor: 9.161

2.  Nonlinear dynamics of stiff polymers.

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Journal:  Phys Rev Lett       Date:  1995-08-07       Impact factor: 9.161

3.  Femtonewton force spectroscopy of single extended DNA molecules.

Authors:  J C Meiners; S R Quake
Journal:  Phys Rev Lett       Date:  2000-05-22       Impact factor: 9.161

4.  Pulling-speed-dependent force-extension profiles for semiflexible chains.

Authors:  Nam-Kyung Lee; D Thirumalai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

5.  Relaxation dynamics of semiflexible polymers.

Authors:  Y Bohbot-Raviv; W Z Zhao; M Feingold; C H Wiggins; R Granek
Journal:  Phys Rev Lett       Date:  2004-03-03       Impact factor: 9.161

6.  Elasticity of semiflexible biopolymer networks.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-12-11       Impact factor: 9.161

7.  Dynamics of inextensible semiflexible filaments.

Authors:  Tanniemola B Liverpool
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-08-15

8.  Wormlike chain theory and bending of short DNA.

Authors:  Alexey K Mazur
Journal:  Phys Rev Lett       Date:  2007-05-24       Impact factor: 9.161

9.  High flexibility of DNA on short length scales probed by atomic force microscopy.

Authors:  Paul A Wiggins; Thijn van der Heijden; Fernando Moreno-Herrero; Andrew Spakowitz; Rob Phillips; Jonathan Widom; Cees Dekker; Philip C Nelson
Journal:  Nat Nanotechnol       Date:  2006-11-03       Impact factor: 39.213

10.  Stretching of semiflexible polymers with elastic bonds.

Authors:  J Kierfeld; O Niamploy; V Sa-yakanit; R Lipowsky
Journal:  Eur Phys J E Soft Matter       Date:  2004-05       Impact factor: 1.890

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  2 in total

1.  Effects of thermal noise on the transitional dynamics of an inextensible elastic filament in stagnation flow.

Authors:  Mingge Deng; Leopold Grinberg; Bruce Caswell; George Em Karniadakis
Journal:  Soft Matter       Date:  2015-06-28       Impact factor: 3.679

2.  How fast does a signal propagate through proteins?

Authors:  Hui T Young; Scott A Edwards; Frauke Gräter
Journal:  PLoS One       Date:  2013-06-06       Impact factor: 3.240

  2 in total

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