Literature DB >> 15221587

Stretching of semiflexible polymers with elastic bonds.

J Kierfeld1, O Niamploy, V Sa-yakanit, R Lipowsky.   

Abstract

A semiflexible harmonic chain model with extensible bonds is introduced and applied to the stretching of semiflexible polymers or filaments. The semiflexible harmonic chain model allows to study effects from bending rigidity, bond extension, discrete chain structure, and finite length of a semiflexible polymer in a unified manner. The interplay between bond extension and external force can be described by an effective inextensible chain with increased stretching force, which leads to apparently reduced persistence lengths in force-extension relations. We obtain force-extension relations for strong- and weak-stretching regimes which include the effects of extensible bonds, discrete chain structure, and finite polymer length. We discuss the associated characteristic force scales and calculate the crossover behaviour of the force-extension curves. Strong stretching is governed by the discrete chain structure and the bond extensibility. The linear response for weak stretching depends on the relative size of the contour length and the persistence length which affects the behaviour of very rigid filaments such as F-actin. The results for the force-extension relations are corroborated by transfer matrix and variational calculations.

Entities:  

Year:  2004        PMID: 15221587     DOI: 10.1140/epje/i2003-10089-3

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  11 in total

1.  Force-Extension Relation and Plateau Modulus for Wormlike Chains.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-07-08       Impact factor: 9.161

2.  Semiflexible polymer in a uniform force field in two dimensions.

Authors:  A Lamura; T W Burkhardt; G Gompper
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-11-21

3.  Mechanics of F-actin characterized with microfabricated cantilevers.

Authors:  Xiumei Liu; Gerald H Pollack
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

4.  Stretching DNA with optical tweezers.

Authors:  M D Wang; H Yin; R Landick; J Gelles; S M Block
Journal:  Biophys J       Date:  1997-03       Impact factor: 4.033

5.  Estimating the persistence length of a worm-like chain molecule from force-extension measurements.

Authors:  C Bouchiat; M D Wang; J Allemand; T Strick; S M Block; V Croquette
Journal:  Biophys J       Date:  1999-01       Impact factor: 4.033

6.  Measurement of the persistence length of polymerized actin using fluorescence microscopy.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-09

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

9.  Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat.

Authors:  W H Taylor; P J Hagerman
Journal:  J Mol Biol       Date:  1990-03-20       Impact factor: 5.469

10.  Entropic elasticity of lambda-phage DNA.

Authors:  C Bustamante; J F Marko; E D Siggia; S Smith
Journal:  Science       Date:  1994-09-09       Impact factor: 47.728

View more
  7 in total

1.  Impact of receptor-ligand distance on adhesion cluster stability.

Authors:  T Erdmann; U S Schwarz
Journal:  Eur Phys J E Soft Matter       Date:  2007-03-09       Impact factor: 1.890

2.  Stretching dynamics of semiflexible polymers.

Authors:  B Obermayer; O Hallatschek; E Frey; K Kroy
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-29       Impact factor: 1.890

3.  Characterization of single semiflexible filaments under geometric constraints.

Authors:  S Köster; J Kierfeld; T Pfohl
Journal:  Eur Phys J E Soft Matter       Date:  2008-04-21       Impact factor: 1.890

4.  Free-energy calculations for semi-flexible macromolecules: applications to DNA knotting and looping.

Authors:  Stefan M Giovan; Robert G Scharein; Andreas Hanke; Stephen D Levene
Journal:  J Chem Phys       Date:  2014-11-07       Impact factor: 3.488

5.  From mechanical folding trajectories to intrinsic energy landscapes of biopolymers.

Authors:  Michael Hinczewski; J Christof M Gebhardt; Matthias Rief; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

6.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

7.  Critical motor number for fractional steps of cytoskeletal filaments in gliding assays.

Authors:  Xin Li; Reinhard Lipowsky; Jan Kierfeld
Journal:  PLoS One       Date:  2012-08-21       Impact factor: 3.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.