Literature DB >> 17708431

Dynamical robustness of biological networks with hierarchical distribution of time scales.

A N Gorban1, O Radulescu.   

Abstract

Concepts of distributed robustness and r-robustness proposed by biologists to explain a variety of stability phenomena in molecular biology are analysed. Then, the robustness of the relaxation time using a chemical reaction description of genetic and signalling networks is discussed. First, the following result for linear networks is obtained: for large multiscale systems with hierarchical distribution of time scales, the variance of the inverse relaxation time (as well as the variance of the stationary rate) is much lower than the variance of the separate constants. Moreover, it can tend to 0 faster than 1/n, where n is the number of reactions. Similar phenomena are valid in the nonlinear case as well. As a numerical illustration, a model of signalling network is used for the important transcription factor NFkappaB.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17708431     DOI: 10.1049/iet-syb:20060083

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  8 in total

1.  Computing the structural influence matrix for biological systems.

Authors:  Giulia Giordano; Christian Cuba Samaniego; Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2015-09-22       Impact factor: 2.259

2.  Structural properties of the MAPK pathway topologies in PC12 cells.

Authors:  Elisa Franco; Franco Blanchini
Journal:  J Math Biol       Date:  2012-10-25       Impact factor: 2.259

3.  Robust simplifications of multiscale biochemical networks.

Authors:  Ovidiu Radulescu; Alexander N Gorban; Andrei Zinovyev; Alain Lilienbaum
Journal:  BMC Syst Biol       Date:  2008-10-14

4.  Zooming of states and parameters using a lumping approach including back-translation.

Authors:  Mikael Sunnåker; Henning Schmidt; Mats Jirstrand; Gunnar Cedersund
Journal:  BMC Syst Biol       Date:  2010-03-18

5.  Structurally robust biological networks.

Authors:  Franco Blanchini; Elisa Franco
Journal:  BMC Syst Biol       Date:  2011-05-17

6.  A method for zooming of nonlinear models of biochemical systems.

Authors:  Mikael Sunnåker; Gunnar Cedersund; Mats Jirstrand
Journal:  BMC Syst Biol       Date:  2011-09-07

7.  An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.

Authors:  Kenneth Barr; John Reinitz; Ovidiu Radulescu
Journal:  PLoS Comput Biol       Date:  2019-11-15       Impact factor: 4.475

8.  Hybrid stochastic simplifications for multiscale gene networks.

Authors:  Alina Crudu; Arnaud Debussche; Ovidiu Radulescu
Journal:  BMC Syst Biol       Date:  2009-09-07
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.