Literature DB >> 1342941

Split decomposition: a new and useful approach to phylogenetic analysis of distance data.

H J Bandelt1, A W Dress.   

Abstract

In order to analyze the structure inherent to a matrix of dissimilarities (such as evolutionary distances) we propose to use a new technique called split decomposition. This method accurately dissects the given dissimilarity measure as a sum of elementary "split" metrics plus a (small) residue. The split summands identify related groups which are susceptible to further interpretation when casted against the available biological information. Reanalysis of previously published ribosomal RNA data sets using split decomposition illustrate the potential of this approach.

Mesh:

Year:  1992        PMID: 1342941     DOI: 10.1016/1055-7903(92)90021-8

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  104 in total

Review 1.  Bacterial population genetics, evolution and epidemiology.

Authors:  B G Spratt; M C Maiden
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-04-29       Impact factor: 6.237

2.  Genetic reassortment of Rift Valley fever virus in nature.

Authors:  A A Sall; P M Zanotto; O K Sene; H G Zeller; J P Digoutte; Y Thiongane; M Bouloy
Journal:  J Virol       Date:  1999-10       Impact factor: 5.103

3.  Adeno-associated viruses undergo substantial evolution in primates during natural infections.

Authors:  Guangping Gao; Mauricio R Alvira; Suryanarayan Somanathan; You Lu; Luk H Vandenberghe; John J Rux; Roberto Calcedo; Julio Sanmiguel; Zahra Abbas; James M Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-25       Impact factor: 11.205

4.  Allelic diversity and recombination in Campylobacter jejuni.

Authors:  S Suerbaum; M Lohrengel; A Sonnevend; F Ruberg; M Kist
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

5.  Molecular evolution of the dotA gene in Legionella pneumophila.

Authors:  Kwan Soo Ko; Seong Karp Hong; Hae Kyung Lee; Mi-Yeoun Park; Yoon-Hoh Kook
Journal:  J Bacteriol       Date:  2003-11       Impact factor: 3.490

6.  Splits or waves? Trees or webs? How divergence measures and network analysis can unravel language histories.

Authors:  Paul Heggarty; Warren Maguire; April McMahon
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-12-12       Impact factor: 6.237

7.  On the shape and fabric of human history.

Authors:  Russell D Gray; David Bryant; Simon J Greenhill
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-12-12       Impact factor: 6.237

8.  Population structure and evolution of pathogenicity of Yersinia pseudotuberculosis.

Authors:  Shear Lane Ch'ng; Sophie Octavia; Qiuyu Xia; An Duong; Mark M Tanaka; Hiroshi Fukushima; Ruiting Lan
Journal:  Appl Environ Microbiol       Date:  2010-12-03       Impact factor: 4.792

9.  Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms.

Authors:  Wei Zhang; Weihong Qi; Thomas J Albert; Alifiya S Motiwala; David Alland; Eija K Hyytia-Trees; Efrain M Ribot; Patricia I Fields; Thomas S Whittam; Bala Swaminathan
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

10.  Genetic diversity, recombination and cryptic clades in Pseudomonas viridiflava infecting natural populations of Arabidopsis thaliana.

Authors:  Erica M Goss; Martin Kreitman; Joy Bergelson
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

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