Literature DB >> 17701545

Protein dynamics and function: insights from the energy landscape and solvent slaving.

Hans Frauenfelder1, Paul W Fenimore, Robert D Young.   

Abstract

Protein motions are complex and a good way to describe them is in terms of a very high-dimensional conformation space. We give here a simple explanation of the conformation space and the energy landscape, the conformational motions and protein reactions, based on an analogy to a traffic problem. The analogy provides insight into the slaving of protein processes to bulk solvent fluctuations, in both the native and unfolded states.

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Year:  2007        PMID: 17701545     DOI: 10.1080/15216540701194113

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  20 in total

1.  Excited protein states of human tear lipocalin for low- and high-affinity ligand binding revealed by functional AB loop motion.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Biophys Chem       Date:  2010-04-09       Impact factor: 2.352

2.  Continuous dissolution of structure during the unfolding of a small protein.

Authors:  Santosh Kumar Jha; Deepak Dhar; Guruswamy Krishnamoorthy; Jayant B Udgaonkar
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

3.  Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure.

Authors:  Prasad V Burra; Ying Zhang; Adam Godzik; Boguslaw Stec
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-24       Impact factor: 11.205

4.  Hydration profiles of amyloidogenic molecular structures.

Authors:  Florin Despa; Ariel Fernández; L Ridgway Scott; R Stephen Berry
Journal:  J Biol Phys       Date:  2008-11-05       Impact factor: 1.365

5.  Cage escape competes with geminate recombination during alkane hydroxylation by the diiron oxygenase AlkB.

Authors:  Rachel N Austin; Kate Luddy; Karla Erickson; Marilla Pender-Cudlip; Erin Bertrand; Dayi Deng; Ryan S Buzdygon; Jan B van Beilen; John T Groves
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

6.  Glass matrix-facilitated thermal reduction: a tool for probing reactions of met hemoglobin with nitrite and nitric oxide.

Authors:  Mahantesh S Navati; Joel M Friedman
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

7.  Reactivity of glass-embedded met hemoglobin derivatives toward external NO: implications for nitrite-mediated production of bioactive NO.

Authors:  Mahantesh S Navati; Joel M Friedman
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

8.  Reverse micelles as a tool for probing solvent modulation of protein dynamics: Reverse micelle encapsulated hemoglobin.

Authors:  Camille J Roche; David Dantsker; Elizabeth R Heller; Joseph E Sabat; Joel M Friedman
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

Review 9.  Large conformational changes in proteins: signaling and other functions.

Authors:  Barry J Grant; Alemayehu A Gorfe; J Andrew McCammon
Journal:  Curr Opin Struct Biol       Date:  2010-01-08       Impact factor: 6.809

10.  Reconciling mediating and slaving roles of water in protein conformational dynamics.

Authors:  Li Zhao; Wenzhao Li; Pu Tian
Journal:  PLoS One       Date:  2013-04-11       Impact factor: 3.240

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