Literature DB >> 17699643

Large sequence polymorphisms classify Mycobacterium tuberculosis strains with ancestral spoligotyping patterns.

Laura Flores1, Tran Van, Sujatha Narayanan, Kathryn DeRiemer, Midori Kato-Maeda, Sebastien Gagneux.   

Abstract

Genomic deletion analysis revealed that strains of Mycobacterium tuberculosis exhibiting spoligotyping patterns with almost all spacers present belong either to a strain lineage that includes the W-Beijing strain family or to the ancestral strain lineage of M. tuberculosis.

Entities:  

Mesh：

Year:  2007        PMID： 17699643      PMCID： PMC2045339          DOI： 10.1128/JCM.00828-07

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  24 in total

Review 1.  Global dissemination of the Mycobacterium tuberculosis W-Beijing family strains.

Authors:  Pablo J Bifani; Barun Mathema; Natalia E Kurepina; Barry N Kreiswirth
Journal:  Trends Microbiol       Date:  2002-01       Impact factor: 17.079

Review 2.  Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development.

Authors:  Sebastien Gagneux; Peter M Small
Journal:  Lancet Infect Dis       Date:  2007-05       Impact factor: 25.071

3.  Evolutionary relationships among strains of Mycobacterium tuberculosis with few copies of IS6110.

Authors:  Jeremy W Dale; Hasan Al-Ghusein; Salim Al-Hashmi; Philip Butcher; Anne L Dickens; Francis Drobniewski; Ken J Forbes; Stephen H Gillespie; Dianie Lamprecht; Timothy D McHugh; Richard Pitman; Nalin Rastogi; Andrew T Smith; Christophe Sola; Hasan Yesilkaya
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

Review 4.  Molecular epidemiology of tuberculosis: current insights.

Authors:  Barun Mathema; Natalia E Kurepina; Pablo J Bifani; Barry N Kreiswirth
Journal:  Clin Microbiol Rev       Date:  2006-10       Impact factor: 26.132

5.  Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data.

Authors:  R M Warren; E M Streicher; S L Sampson; G D van der Spuy; M Richardson; D Nguyen; M A Behr; T C Victor; P D van Helden
Journal:  J Clin Microbiol       Date:  2002-12       Impact factor: 5.948

6.  A new evolutionary scenario for the Mycobacterium tuberculosis complex.

Authors:  R Brosch; S V Gordon; M Marmiesse; P Brodin; C Buchrieser; K Eiglmeier; T Garnier; C Gutierrez; G Hewinson; K Kremer; L M Parsons; A S Pym; S Samper; D van Soolingen; S T Cole
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

7.  Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area.

Authors:  Philip Supply; Robin M Warren; Anne-Laure Bañuls; Sarah Lesjean; Gian D Van Der Spuy; Lee-Anne Lewis; Michel Tibayrenc; Paul D Van Helden; Camille Locht
Journal:  Mol Microbiol       Date:  2003-01       Impact factor: 3.501

8.  Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex.

Authors:  Serge Mostowy; Debby Cousins; Jacqui Brinkman; Alicia Aranaz; Marcel A Behr
Journal:  J Infect Dis       Date:  2002-05-30       Impact factor: 5.226

9.  Genotyping of the Mycobacterium tuberculosis complex using MIRUs: association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics.

Authors:  Christophe Sola; Ingrid Filliol; Eric Legrand; Sarah Lesjean; Camille Locht; Philippe Supply; Nalin Rastogi
Journal:  Infect Genet Evol       Date:  2003-07       Impact factor: 3.342

10.  Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology.

Authors:  Karine Brudey; Jeffrey R Driscoll; Leen Rigouts; Wolfgang M Prodinger; Andrea Gori; Sahal A Al-Hajoj; Caroline Allix; Liselotte Aristimuño; Jyoti Arora; Viesturs Baumanis; Lothar Binder; Patricia Cafrune; Angel Cataldi; Soonfatt Cheong; Roland Diel; Christopher Ellermeier; Jason T Evans; Maryse Fauville-Dufaux; Séverine Ferdinand; Dario Garcia de Viedma; Carlo Garzelli; Lidia Gazzola; Harrison M Gomes; M Cristina Guttierez; Peter M Hawkey; Paul D van Helden; Gurujaj V Kadival; Barry N Kreiswirth; Kristin Kremer; Milan Kubin; Savita P Kulkarni; Benjamin Liens; Troels Lillebaek; Minh Ly Ho; Carlos Martin; Christian Martin; Igor Mokrousov; Olga Narvskaïa; Yun Fong Ngeow; Ludmilla Naumann; Stefan Niemann; Ida Parwati; Zeaur Rahim; Voahangy Rasolofo-Razanamparany; Tiana Rasolonavalona; M Lucia Rossetti; Sabine Rüsch-Gerdes; Anna Sajduda; Sofia Samper; Igor G Shemyakin; Urvashi B Singh; Akos Somoskovi; Robin A Skuce; Dick van Soolingen; Elisabeth M Streicher; Philip N Suffys; Enrico Tortoli; Tatjana Tracevska; Véronique Vincent; Tommie C Victor; Robin M Warren; Sook Fan Yap; Khadiza Zaman; Françoise Portaels; Nalin Rastogi; Christophe Sola
Journal:  BMC Microbiol       Date:  2006-03-06       Impact factor: 3.605
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  38 in total

1.  Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes.

Authors:  M Kato-Maeda; S Gagneux; L L Flores; E Y Kim; P M Small; E P Desmond; P C Hopewell
Journal:  Int J Tuberc Lung Dis       Date:  2011-01       Impact factor: 2.373

2.  Does M. tuberculosis genomic diversity explain disease diversity?

Authors:  Mireilla Coscolla; Sebastien Gagneux
Journal:  Drug Discov Today Dis Mech       Date:  2010

3.  Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates.

Authors:  Caroline Allix-Béguec; Dag Harmsen; Thomas Weniger; Philip Supply; Stefan Niemann
Journal:  J Clin Microbiol       Date:  2008-06-11       Impact factor: 5.948

4.  Evaluation of Semiautomated IS6110-Based Restriction Fragment Length Polymorphism Typing for Mycobacterium tuberculosis in a High-Burden Setting.

Authors:  Halima M Said; Keshav Krishnamani; Shaheed V Omar; Andries W Dreyer; Bianca Sansom; Dorothy Fallows; Nazir A Ismail
Journal:  J Clin Microbiol       Date:  2016-08-03       Impact factor: 5.948

5.  Origins of a 350-kilobase genomic duplication in Mycobacterium tuberculosis and its impact on virulence.

Authors:  Pilar Domenech; Anya Rog; Jalal-ud-din Moolji; Nicolas Radomski; Ashley Fallow; Lizbel Leon-Solis; Julia Bowes; Marcel A Behr; Michael B Reed
Journal:  Infect Immun       Date:  2014-04-28       Impact factor: 3.441

6.  Dominant Mycobacterium tuberculosis lineages in elderly patients born in Norway.

Authors:  Wibeke Kinander; Torbjørn Bruvik; Ulf R Dahle
Journal:  PLoS One       Date:  2009-12-18       Impact factor: 3.240

7.  Drug resistant Mycobacterium tuberculosis of the Beijing genotype does not spread in Sweden.

Authors:  Solomon Ghebremichael; Ramona Groenheit; Alexandra Pennhag; Tuija Koivula; Emmi Andersson; Judith Bruchfeld; Sven Hoffner; Victoria Romanus; Gunilla Källenius
Journal:  PLoS One       Date:  2010-05-28       Impact factor: 3.240

8.  Diversity of Mycobacterium tuberculosis genotypes circulating in Ndola, Zambia.

Authors:  Chanda Mulenga; Isdore C Shamputa; David Mwakazanga; Nathan Kapata; Françoise Portaels; Leen Rigouts
Journal:  BMC Infect Dis       Date:  2010-06-17       Impact factor: 3.090

9.  Bacterial genetic signatures of human social phenomena among M. tuberculosis from an Aboriginal Canadian population.

Authors:  Caitlin Pepperell; Vernon H Hoeppner; Mikhail Lipatov; Wendy Wobeser; Gary K Schoolnik; Marcus W Feldman
Journal:  Mol Biol Evol       Date:  2009-10-27       Impact factor: 16.240

10.  Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.

Authors:  Iñaki Comas; Susanne Homolka; Stefan Niemann; Sebastien Gagneux
Journal:  PLoS One       Date:  2009-11-12       Impact factor: 3.240
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