Literature DB >> 17698585

Human Cdc34 employs distinct sites to coordinate attachment of ubiquitin to a substrate and assembly of polyubiquitin chains.

Stefan Gazdoiu1, Kosj Yamoah, Kenneth Wu, Zhen-Qiang Pan.   

Abstract

The Cdc34 E2 ubiquitin (Ub) conjugating enzyme catalyzes polyubiquitination of a substrate recruited by the Skp1-Cullin 1-F-box protein-ROC1 E3 Ub ligase. Using mutagenesis studies, we now show that human Cdc34 employs distinct sites to coordinate the transfer of Ub to a substrate and the assembly of polyubiquitin chains. Mutational disruption of the conserved charged stretch (residues 143 to 153) or the acidic loop residues D102 and D103 led to accumulation of monoubiquitinated IkappaBalpha while failing to yield polyubiquitin chains, due to a catalytic defect in Ub-Ub ligation. These results suggest an ability of human Cdc34 to position the attacking Ub for assembly of polyubiquitin chains. Analysis of Cdc34N85Q and Cdc34S138A revealed severe defects of these mutants in both poly- and monoubiquitination of IkappaBalpha, supporting a role for N85 in stabilizing the oxyanion and in coordinating, along with S138, the attacking lysine for catalysis. Finally, Cdc34S95D and Cdc34(E108A/E112A) abolished both poly- and monoubiquitination of IkappaBalpha. Unexpectedly, the catalytic defects of these mutants in di-Ub synthesis can be rescued by fusion of a glutathione S-transferase moiety at E2's N terminus. These findings support the hypothesis that human Cdc34 S95 and E108/E112 are required to position the donor Ub optimally for catalysis, in a manner that might depend on E2 dimerization.

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Year:  2007        PMID: 17698585      PMCID: PMC2168909          DOI: 10.1128/MCB.00812-07

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  39 in total

1.  Molecular insights into polyubiquitin chain assembly: crystal structure of the Mms2/Ubc13 heterodimer.

Authors:  A P VanDemark; R M Hofmann; C Tsui; C M Pickart; C Wolberger
Journal:  Cell       Date:  2001-06-15       Impact factor: 41.582

Review 2.  Mechanisms underlying ubiquitination.

Authors:  C M Pickart
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

3.  A conserved catalytic residue in the ubiquitin-conjugating enzyme family.

Authors:  Pei-Ying Wu; Mary Hanlon; Michael Eddins; Colleen Tsui; Richard S Rogers; Jane P Jensen; Michael J Matunis; Allan M Weissman; Allan M Weisman; Allan M Weissman; Cynthia Wolberger; Cynthia P Wolberger; Cecile M Pickart
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

4.  Release of ubiquitin-charged Cdc34-S - Ub from the RING domain is essential for ubiquitination of the SCF(Cdc4)-bound substrate Sic1.

Authors:  Andrew E Deffenbaugh; K Matthew Scaglione; Lingxiao Zhang; Johnnie M Moore; Tione Buranda; Larry A Sklar; Dorota Skowyra
Journal:  Cell       Date:  2003-09-05       Impact factor: 41.582

5.  The conserved RING-H2 finger of ROC1 is required for ubiquitin ligation.

Authors:  A Chen; K Wu; S Y Fuchs; P Tan; C Gomez; Z Q Pan
Journal:  J Biol Chem       Date:  2000-05-19       Impact factor: 5.157

6.  The yeast cell cycle gene CDC34 encodes a ubiquitin-conjugating enzyme.

Authors:  M G Goebl; J Yochem; S Jentsch; J P McGrath; A Varshavsky; B Byers
Journal:  Science       Date:  1988-09-09       Impact factor: 47.728

7.  The Nedd8-conjugated ROC1-CUL1 core ubiquitin ligase utilizes Nedd8 charged surface residues for efficient polyubiquitin chain assembly catalyzed by Cdc34.

Authors:  Kenneth Wu; Angus Chen; Peilin Tan; Zhen-Qiang Pan
Journal:  J Biol Chem       Date:  2001-10-23       Impact factor: 5.157

8.  Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex.

Authors:  Ning Zheng; Brenda A Schulman; Langzhou Song; Julie J Miller; Philip D Jeffrey; Ping Wang; Claire Chu; Deanna M Koepp; Stephen J Elledge; Michele Pagano; Ronald C Conaway; Joan W Conaway; J Wade Harper; Nikola P Pavletich
Journal:  Nature       Date:  2002-04-18       Impact factor: 49.962

9.  Cdc34 self-association is facilitated by ubiquitin thiolester formation and is required for its catalytic activity.

Authors:  Xaralabos Varelas; Christopher Ptak; Michael J Ellison
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

Review 10.  Nedd8 on cullin: building an expressway to protein destruction.

Authors:  Zhen-Qiang Pan; Alex Kentsis; Dora C Dias; Kosj Yamoah; Kenneth Wu
Journal:  Oncogene       Date:  2004-03-15       Impact factor: 9.867

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  21 in total

1.  Multimodal mechanism of action for the Cdc34 acidic loop: a case study for why ubiquitin-conjugating enzymes have loops and tails.

Authors:  Amy Ziemba; Spencer Hill; Daniella Sandoval; Kristofor Webb; Eric J Bennett; Gary Kleiger
Journal:  J Biol Chem       Date:  2013-10-15       Impact factor: 5.157

2.  A snapshot of ubiquitin chain elongation: lysine 48-tetra-ubiquitin slows down ubiquitination.

Authors:  Jordan Kovacev; Kenneth Wu; Donald E Spratt; Robert A Chong; Chan Lee; Jaladhi Nayak; Gary S Shaw; Zhen-Qiang Pan
Journal:  J Biol Chem       Date:  2014-01-24       Impact factor: 5.157

3.  The human Cdc34 carboxyl terminus contains a non-covalent ubiquitin binding activity that contributes to SCF-dependent ubiquitination.

Authors:  Yun-Seok Choi; Kenneth Wu; Kwiwan Jeong; Daeyoup Lee; Young Ho Jeon; Byong-Seok Choi; Zhen-Qiang Pan; Kyoung-Seok Ryu; Chaejoon Cheong
Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

Review 4.  E2s: structurally economical and functionally replete.

Authors:  Dawn M Wenzel; Kate E Stoll; Rachel E Klevit
Journal:  Biochem J       Date:  2011-01-01       Impact factor: 3.857

5.  S. pombe Uba1-Ubc15 Structure Reveals a Novel Regulatory Mechanism of Ubiquitin E2 Activity.

Authors:  Zongyang Lv; Kimberly A Rickman; Lingmin Yuan; Katelyn Williams; Shanmugam Panneer Selvam; Alec N Woosley; Philip H Howe; Besim Ogretmen; Agata Smogorzewska; Shaun K Olsen
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

6.  Molecular basis for lysine specificity in the yeast ubiquitin-conjugating enzyme Cdc34.

Authors:  Martin Sadowski; Randy Suryadinata; Xianning Lai; Jörg Heierhorst; Boris Sarcevic
Journal:  Mol Cell Biol       Date:  2010-03-01       Impact factor: 4.272

7.  Solution structure and dynamics of human ubiquitin conjugating enzyme Ube2g2.

Authors:  Tingting Ju; William Bocik; Ananya Majumdar; Joel R Tolman
Journal:  Proteins       Date:  2010-04

Review 8.  Building ubiquitin chains: E2 enzymes at work.

Authors:  Yihong Ye; Michael Rape
Journal:  Nat Rev Mol Cell Biol       Date:  2009-11       Impact factor: 94.444

9.  Pivotal role for the ubiquitin Y59-E51 loop in lysine 48 polyubiquitination.

Authors:  Robert A Chong; Kenneth Wu; Donald E Spratt; Yingying Yang; Chan Lee; Jaladhi Nayak; Ming Xu; Rana Elkholi; Inger Tappin; Jessica Li; Jerard Hurwitz; Brian D Brown; Jerry Edward Chipuk; Zhijian J Chen; Roberto Sanchez; Gary S Shaw; Lan Huang; Zhen-Qiang Pan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

10.  Correlation between recombinase activating gene 1 ubiquitin ligase activity and V(D)J recombination.

Authors:  Carrie Simkus; Anamika Bhattacharyya; Ming Zhou; Timothy D Veenstra; Jessica M Jones
Journal:  Immunology       Date:  2009-10       Impact factor: 7.397

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