Literature DB >> 17696383

Microscale solution isoelectric focusing as an effective strategy enabling containment of hemeoglobin-derived products for high-resolution gel-based analysis of the Plasmodium falciparum proteome.

Niroshini Nirmalan1, Fiona Flett, Tom Skinner, John E Hyde, Paul F G Sims.   

Abstract

The high hemeozoin (beta-hemeatin) content of Plasmodium falciparum lysates imposes severe limitations on the analysis of the malarial proteome, in particular compromising the loading capacities of two-dimensional gels. Here we report on the adaptation of a recently developed solution-phase isoelectric focusing-based fractionation technique as a prefractionation strategy for efficient containment of hemeoglobin-derived products and complexity reduction, to facilitate the high-resolution gel-based quantitative analysis of plasmodial lysates.

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Year:  2007        PMID: 17696383      PMCID: PMC2632839          DOI: 10.1021/pr070278r

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  21 in total

1.  Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry: proteomics of Toxoplasma gondii.

Authors:  A M Cohen; K Rumpel; G H Coombs; J M Wastling
Journal:  Int J Parasitol       Date:  2002-01       Impact factor: 3.981

Review 2.  Methods for fractionation, separation and profiling of proteins and peptides.

Authors:  Haleem J Issaq; Thomas P Conrads; George M Janini; Timothy D Veenstra
Journal:  Electrophoresis       Date:  2002-09       Impact factor: 3.535

Review 3.  Comprehensive proteome analysis by chromatographic protein prefractionation.

Authors:  Pierre Lescuyer; Denis F Hochstrasser; Jean-Charles Sanchez
Journal:  Electrophoresis       Date:  2004-04       Impact factor: 3.535

4.  A membrane network for nutrient import in red cells infected with the malaria parasite.

Authors:  S A Lauer; P K Rathod; N Ghori; K Haldar
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

5.  Evaluation of nonionic and zwitterionic detergents as membrane protein solubilizers in two-dimensional electrophoresis.

Authors:  Sylvie Luche; Véronique Santoni; Thierry Rabilloud
Journal:  Proteomics       Date:  2003-03       Impact factor: 3.984

6.  Simple in vitro cultivation of the malaria parasite Plasmodium falciparum (erythrocytic stages) suitable for large-scale preparations.

Authors:  M Read; J E Hyde
Journal:  Methods Mol Biol       Date:  1993

7.  Quantitative proteomics of the human malaria parasite Plasmodium falciparum and its application to studies of development and inhibition.

Authors:  Niroshini Nirmalan; Paul F G Sims; John E Hyde
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

8.  The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum.

Authors:  Zbynek Bozdech; Manuel Llinás; Brian Lee Pulliam; Edith D Wong; Jingchun Zhu; Joseph L DeRisi
Journal:  PLoS Biol       Date:  2003-08-18       Impact factor: 8.029

9.  Genome sequence of the human malaria parasite Plasmodium falciparum.

Authors:  Malcolm J Gardner; Neil Hall; Eula Fung; Owen White; Matthew Berriman; Richard W Hyman; Jane M Carlton; Arnab Pain; Karen E Nelson; Sharen Bowman; Ian T Paulsen; Keith James; Jonathan A Eisen; Kim Rutherford; Steven L Salzberg; Alister Craig; Sue Kyes; Man-Suen Chan; Vishvanath Nene; Shamira J Shallom; Bernard Suh; Jeremy Peterson; Sam Angiuoli; Mihaela Pertea; Jonathan Allen; Jeremy Selengut; Daniel Haft; Michael W Mather; Akhil B Vaidya; David M A Martin; Alan H Fairlamb; Martin J Fraunholz; David S Roos; Stuart A Ralph; Geoffrey I McFadden; Leda M Cummings; G Mani Subramanian; Chris Mungall; J Craig Venter; Daniel J Carucci; Stephen L Hoffman; Chris Newbold; Ronald W Davis; Claire M Fraser; Bart Barrell
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

10.  Chloroquine resistance not linked to mdr-like genes in a Plasmodium falciparum cross.

Authors:  T E Wellems; L J Panton; I Y Gluzman; V E do Rosario; R W Gwadz; A Walker-Jonah; D J Krogstad
Journal:  Nature       Date:  1990-05-17       Impact factor: 49.962

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  5 in total

1.  Proteome characterization of cassava (Manihot esculenta Crantz) somatic embryos, plantlets and tuberous roots.

Authors:  Kaimian Li; Wenli Zhu; Kang Zeng; Zhenwen Zhang; Jianqiu Ye; Wenjun Ou; Samrina Rehman; Bruria Heuer; Songbi Chen
Journal:  Proteome Sci       Date:  2010-02-27       Impact factor: 2.480

2.  A protein-centric approach for the identification of folate enzymes from the malarial parasite, Plasmodium falciparum, using OFFGEL™ solution-based isoelectric focussing and mass spectrometry.

Authors:  Ronan D M O'Cualain; John E Hyde; Paul F G Sims
Journal:  Malar J       Date:  2010-10-18       Impact factor: 2.979

3.  Lamin B1 maintains the functional plasticity of nucleoli.

Authors:  Catherine Martin; Songbi Chen; Apolinar Maya-Mendoza; Josip Lovric; Paul F G Sims; Dean A Jackson
Journal:  J Cell Sci       Date:  2009-04-21       Impact factor: 5.285

4.  Dynamic subcellular localization of isoforms of the folate pathway enzyme serine hydroxymethyltransferase (SHMT) through the erythrocytic cycle of Plasmodium falciparum.

Authors:  Martin Read; Ingrid B Müller; Sarah L Mitchell; Paul F G Sims; John E Hyde
Journal:  Malar J       Date:  2010-12-03       Impact factor: 2.979

5.  A mass spectrometric strategy for absolute quantification of Plasmodium falciparum proteins of low abundance.

Authors:  Paul M Southworth; John E Hyde; Paul F G Sims
Journal:  Malar J       Date:  2011-10-25       Impact factor: 2.979

  5 in total

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