Literature DB >> 17687370

The minimum information required for reporting a molecular interaction experiment (MIMIx).

Sandra Orchard1, Lukasz Salwinski, Samuel Kerrien, Luisa Montecchi-Palazzi, Matthias Oesterheld, Volker Stümpflen, Arnaud Ceol, Andrew Chatr-aryamontri, John Armstrong, Peter Woollard, John J Salama, Susan Moore, Jérôme Wojcik, Gary D Bader, Marc Vidal, Michael E Cusick, Mark Gerstein, Anne-Claude Gavin, Giulio Superti-Furga, Jack Greenblatt, Joel Bader, Peter Uetz, Mike Tyers, Pierre Legrain, Stan Fields, Nicola Mulder, Michael Gilson, Michael Niepmann, Lyle Burgoon, Javier De Las Rivas, Carlos Prieto, Victoria M Perreau, Chris Hogue, Hans-Werner Mewes, Rolf Apweiler, Ioannis Xenarios, David Eisenberg, Gianni Cesareni, Henning Hermjakob.   

Abstract

A wealth of molecular interaction data is available in the literature, ranging from large-scale datasets to a single interaction confirmed by several different techniques. These data are all too often reported either as free text or in tables of variable format, and are often missing key pieces of information essential for a full understanding of the experiment. Here we propose MIMIx, the minimum information required for reporting a molecular interaction experiment. Adherence to these reporting guidelines will result in publications of increased clarity and usefulness to the scientific community and will support the rapid, systematic capture of molecular interaction data in public databases, thereby improving access to valuable interaction data.

Mesh:

Year:  2007        PMID: 17687370     DOI: 10.1038/nbt1324

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  106 in total

1.  The FEBS Letters/BioCreative II.5 experiment: making biological information accessible.

Authors:  Florian Leitner; Andrew Chatr-aryamontri; Scott A Mardis; Arnaud Ceol; Martin Krallinger; Luana Licata; Lynette Hirschman; Gianni Cesareni; Alfonso Valencia
Journal:  Nat Biotechnol       Date:  2010-09       Impact factor: 54.908

2.  Minimum information about a protein affinity reagent (MIAPAR).

Authors:  Julie Bourbeillon; Sandra Orchard; Itai Benhar; Carl Borrebaeck; Antoine de Daruvar; Stefan Dübel; Ronald Frank; Frank Gibson; David Gloriam; Niall Haslam; Tara Hiltker; Ian Humphrey-Smith; Michael Hust; David Juncker; Manfred Koegl; Zoltàn Konthur; Bernhard Korn; Sylvia Krobitsch; Serge Muyldermans; Per-Ake Nygren; Sandrine Palcy; Bojan Polic; Henry Rodriguez; Alan Sawyer; Martin Schlapshy; Michael Snyder; Oda Stoevesandt; Michael J Taussig; Markus Templin; Matthias Uhlen; Silvere van der Maarel; Christer Wingren; Henning Hermjakob; David Sherman
Journal:  Nat Biotechnol       Date:  2010-07       Impact factor: 54.908

Review 3.  Functional and genomic context in pathway analysis of GWAS data.

Authors:  Michael A Mooney; Joel T Nigg; Shannon K McWeeney; Beth Wilmot
Journal:  Trends Genet       Date:  2014-08-22       Impact factor: 11.639

Review 4.  Bioinformatics and cancer research: building bridges for translational research.

Authors:  Gonzalo Gómez-López; Alfonso Valencia
Journal:  Clin Transl Oncol       Date:  2008-02       Impact factor: 3.405

5.  A general pipeline for quality and statistical assessment of protein interaction data using R and Bioconductor.

Authors:  Tony Chiang; Denise Scholtens
Journal:  Nat Protoc       Date:  2009-03-26       Impact factor: 13.491

6.  Mostly, your results matter to others.

Authors: 
Journal:  Nat Genet       Date:  2009-02       Impact factor: 38.330

Review 7.  Protein Bioinformatics Databases and Resources.

Authors:  Chuming Chen; Hongzhan Huang; Cathy H Wu
Journal:  Methods Mol Biol       Date:  2017

Review 8.  Approaches for the study of cancer: towards the integration of genomics, proteomics and metabolomics.

Authors:  Juan Casado-Vela; Arancha Cebrián; María Teresa Gómez del Pulgar; Juan Carlos Lacal
Journal:  Clin Transl Oncol       Date:  2011-09       Impact factor: 3.405

9.  Integrating and annotating the interactome using the MiMI plugin for cytoscape.

Authors:  Jing Gao; Alex S Ade; V Glenn Tarcea; Terry E Weymouth; Barbara R Mirel; H V Jagadish; David J States
Journal:  Bioinformatics       Date:  2008-09-23       Impact factor: 6.937

10.  pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis.

Authors:  Johann Pellet; Laurène Meyniel; Pierre-Olivier Vidalain; Benoît de Chassey; Lionel Tafforeau; Vincent Lotteau; Chantal Rabourdin-Combe; Vincent Navratil
Journal:  BMC Res Notes       Date:  2009-10-29
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