Literature DB >> 17681777

Systems biology of aging in four species.

Jacob M Zahn1, Stuart K Kim.   

Abstract

Using DNA microarrays to generate transcriptional profiles of the aging process is a powerful tool for identifying biomarkers of aging. In Caenorhabditis elegans, a number of whole-genome profiling studies identified genes that change expression levels with age. High-throughput RNAi screens in worms determined a number of genes that modulate lifespan when silenced. Transcriptional profiling of the fly head identified a molecular pathway, the 'response to light' gene set, that increases expression with age and could be directly related to the tendency for a reduction in light levels to extend fly's lifespan. In mouse, comparing the gene expression profiles of several drugs to the gene expression profile of caloric restriction identified metformin as a drug whose action could potentially mimic caloric restriction in vivo. Finally, genes in the mitochondrial electron transport chain group decrease expression with age in the human, mouse, fly, and worm.

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Year:  2007        PMID: 17681777      PMCID: PMC3224768          DOI: 10.1016/j.copbio.2007.07.004

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  43 in total

1.  Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

Authors:  Steven A McCarroll; Coleen T Murphy; Sige Zou; Scott D Pletcher; Chen-Shan Chin; Yuh Nung Jan; Cynthia Kenyon; Cornelia I Bargmann; Hao Li
Journal:  Nat Genet       Date:  2004-01-18       Impact factor: 38.330

2.  Shared transcriptional signature in Caenorhabditis elegans Dauer larvae and long-lived daf-2 mutants implicates detoxification system in longevity assurance.

Authors:  Joshua J McElwee; Eugene Schuster; Eric Blanc; James H Thomas; David Gems
Journal:  J Biol Chem       Date:  2004-08-11       Impact factor: 5.157

3.  Age-dependent changes of gene expression in the Drosophila head.

Authors:  Se Nyun Kim; Ji-Hwan Rhee; Young-Hwa Song; Dong Yoon Park; Mina Hwang; Sung-Ll Lee; Ja Eun Kim; Byung Soo Gim; Jeong Ho Yoon; Young-Joon Kim; Jeongsil Kim-Ha
Journal:  Neurobiol Aging       Date:  2005-07       Impact factor: 4.673

Review 4.  Sirtuins in aging and age-related disease.

Authors:  Valter D Longo; Brian K Kennedy
Journal:  Cell       Date:  2006-07-28       Impact factor: 41.582

5.  Increased cell-to-cell variation in gene expression in ageing mouse heart.

Authors:  Rumana Bahar; Claudia H Hartmann; Karl A Rodriguez; Ashley D Denny; Rita A Busuttil; Martijn E T Dollé; R Brent Calder; Gary B Chisholm; Brad H Pollock; Christoph A Klein; Jan Vijg
Journal:  Nature       Date:  2006-06-22       Impact factor: 49.962

6.  Molecular basis of age-associated cytokine dysregulation in LPS-stimulated macrophages.

Authors:  R Lakshman Chelvarajan; Yushu Liu; Diana Popa; Marilyn L Getchell; Thomas V Getchell; Arnold J Stromberg; Subbarao Bondada
Journal:  J Leukoc Biol       Date:  2006-04-07       Impact factor: 4.962

7.  Skeletal muscle gene expression profiles in 20-29 year old and 65-71 year old women.

Authors:  Stephen Welle; Andrew I Brooks; Joseph M Delehanty; Nancy Needler; Kirti Bhatt; Bharati Shah; Charles A Thornton
Journal:  Exp Gerontol       Date:  2004-03       Impact factor: 4.032

8.  Aging and gene expression in the primate brain.

Authors:  Hunter B Fraser; Philipp Khaitovich; Joshua B Plotkin; Svante Pääbo; Michael B Eisen
Journal:  PLoS Biol       Date:  2005-08-02       Impact factor: 8.029

9.  Transcriptional profiling of aging in human muscle reveals a common aging signature.

Authors:  Jacob M Zahn; Rebecca Sonu; Hannes Vogel; Emily Crane; Krystyna Mazan-Mamczarz; Ralph Rabkin; Ronald W Davis; Kevin G Becker; Art B Owen; Stuart K Kim
Journal:  PLoS Genet       Date:  2006-06-09       Impact factor: 5.917

10.  Lifespan regulation by evolutionarily conserved genes essential for viability.

Authors:  Sean P Curran; Gary Ruvkun
Journal:  PLoS Genet       Date:  2007-02-27       Impact factor: 5.917

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  27 in total

1.  Elevated histone expression promotes life span extension.

Authors:  Jason Feser; David Truong; Chandrima Das; Joshua J Carson; Jeffrey Kieft; Troy Harkness; Jessica K Tyler
Journal:  Mol Cell       Date:  2010-09-10       Impact factor: 17.970

2.  Anti-senescence effect and molecular mechanism of the major royal jelly proteins on human embryonic lung fibroblast (HFL-I) cell line.

Authors:  Chen-Min Jiang; Xin Liu; Chun-Xue Li; Hao-Cheng Qian; Di Chen; Chao-Qiang Lai; Li-Rong Shen
Journal:  J Zhejiang Univ Sci B       Date:  2018 Dec.       Impact factor: 3.066

3.  Apolipoprotein D: an overview of its role in aging and age-related diseases.

Authors:  Julien Muffat; David W Walker
Journal:  Cell Cycle       Date:  2010-01-26       Impact factor: 4.534

Review 4.  Biomarkers of skin aging.

Authors:  Theodora Kanaki; Evgenia Makrantonaki; Christos C Zouboulis
Journal:  Rev Endocr Metab Disord       Date:  2016-09       Impact factor: 6.514

5.  Unraveling human complexity and disease with systems biology and personalized medicine.

Authors:  Stephen Naylor; Jake Y Chen
Journal:  Per Med       Date:  2010-05       Impact factor: 2.512

Review 6.  Recent Advances in the Systems Biology of Aging.

Authors:  Mark A McCormick; Daniel E L Promislow
Journal:  Antioxid Redox Signal       Date:  2017-11-20       Impact factor: 8.401

Review 7.  Genetics and genomics of human ageing.

Authors:  Heather E Wheeler; Stuart K Kim
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-01-12       Impact factor: 6.237

8.  Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans.

Authors:  Suresh Swain; Jodie F Wren; Stephen R Stürzenbaum; Peter Kille; A John Morgan; Tjalling Jager; Martijs J Jonker; Peter K Hankard; Claus Svendsen; Jenifer Owen; B Ann Hedley; Mark Blaxter; David J Spurgeon
Journal:  BMC Syst Biol       Date:  2010-03-23

9.  Maintenance of respiratory chain function in mouse hearts with severely impaired mtDNA transcription.

Authors:  Christoph Freyer; Chan Bae Park; Mats I Ekstrand; Yonghong Shi; Julia Khvorostova; Rolf Wibom; Maria Falkenberg; Claes M Gustafsson; Nils-Göran Larsson
Journal:  Nucleic Acids Res       Date:  2010-06-20       Impact factor: 16.971

10.  The challenges for molecular nutrition research 3: comparative nutrigenomics research as a basis for entering the systems level.

Authors:  Hannelore Daniel; Christian A Drevon; Ulla I Klein; Robert Kleemann; Ben van Ommen
Journal:  Genes Nutr       Date:  2008-10-01       Impact factor: 5.523

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