Literature DB >> 17678444

Orthology and functional conservation in eukaryotes.

Kara Dolinski1, David Botstein.   

Abstract

In recent years, it has become clear that all of the organisms on the Earth are related to each other in ways that can be documented by molecular sequence comparison. In this review, we focus on the evolutionary relationships among the proteins of the eukaryotes, especially those that allow inference of function from one species to another. Data and illustrations are derived from specific comparison of eight species: Homo sapiens, Mus musculus, Arabidopsis thaliana, Caenorhabditis elegans, Danio rerio, Saccharomyces cerevisiae, and Plasmodium falciparum.

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Year:  2007        PMID: 17678444     DOI: 10.1146/annurev.genet.40.110405.090439

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  47 in total

1.  Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Authors:  Aashiq H Kachroo; Jon M Laurent; Christopher M Yellman; Austin G Meyer; Claus O Wilke; Edward M Marcotte
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

Review 2.  Model organism data evolving in support of translational medicine.

Authors:  Douglas G Howe; Judith A Blake; Yvonne M Bradford; Carol J Bult; Brian R Calvi; Stacia R Engel; James A Kadin; Thomas C Kaufman; Ranjana Kishore; Stanley J F Laulederkind; Suzanna E Lewis; Sierra A T Moxon; Joel E Richardson; Cynthia Smith
Journal:  Lab Anim (NY)       Date:  2018-09-17       Impact factor: 12.625

3.  Understanding rare disease pathogenesis: a grand challenge for model organisms.

Authors:  Philip Hieter; Kym M Boycott
Journal:  Genetics       Date:  2014-10       Impact factor: 4.562

4.  An overview of germline variations in genes of primary immunodeficiences through integrative analysis of ClinVar, HGMD® and dbSNP databases.

Authors:  Lyubov E Salnikova; Dmitry S Kolobkov; Darya A Sviridova; Serikbai K Abilev
Journal:  Hum Genet       Date:  2021-07-16       Impact factor: 4.132

5.  Intronic elements in the Na+/I- symporter gene (NIS) interact with retinoic acid receptors and mediate initiation of transcription.

Authors:  Hani Alotaibi; Elif Yaman; Domenico Salvatore; Valeria Di Dato; Pelin Telkoparan; Roberto Di Lauro; Uygar H Tazebay
Journal:  Nucleic Acids Res       Date:  2010-01-31       Impact factor: 16.971

6.  Structural determination of the phosphorylation domain of the ryanodine receptor.

Authors:  Parveen Sharma; Noboru Ishiyama; Usha Nair; Wenping Li; Aiping Dong; Tetsuaki Miyake; Aaron Wilson; Tim Ryan; David H MacLennan; Thomas Kislinger; Mitsuhiko Ikura; Sirano Dhe-Paganon; Anthony O Gramolini
Journal:  FEBS J       Date:  2012-09-11       Impact factor: 5.542

7.  The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species.

Authors: 
Journal:  PLoS Comput Biol       Date:  2009-07-03       Impact factor: 4.475

8.  OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

Authors:  Fabian Schreiber; Kerstin Pick; Dirk Erpenbeck; Gert Wörheide; Burkhard Morgenstern
Journal:  BMC Bioinformatics       Date:  2009-07-16       Impact factor: 3.169

9.  PlnTFDB: updated content and new features of the plant transcription factor database.

Authors:  Paulino Pérez-Rodríguez; Diego Mauricio Riaño-Pachón; Luiz Gustavo Guedes Corrêa; Stefan A Rensing; Birgit Kersten; Bernd Mueller-Roeber
Journal:  Nucleic Acids Res       Date:  2009-10-25       Impact factor: 16.971

10.  InParanoid 7: new algorithms and tools for eukaryotic orthology analysis.

Authors:  Gabriel Ostlund; Thomas Schmitt; Kristoffer Forslund; Tina Köstler; David N Messina; Sanjit Roopra; Oliver Frings; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2009-11-05       Impact factor: 16.971

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